Peer Review History

Original SubmissionNovember 15, 2021
Decision Letter - Reyazul Rouf Mir, Editor

PONE-D-21-36225Research on a rapid identification method for counting universal grain crops:a fast, accurate, low-cost, easy-to-operate, and universal grain counting toolPLOS ONE

Dear Dr. Xiaochun Zhong,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

            ==============================

           ACADEMIC EDITOR:

  • The manuscript is dealing with very important subject that is extracting data using images. II have myself also read the manuscript and found this very useful for the scholars/students working in the area. The manuscript needs improvement by keeping in view comments of the reviewer. Some of my own comments are:
    1. Improve presentation of data in tables and figures
    2. The different steps involved may be presented in the form of flow chart
    3. Test files may be provided in the form of supplementary material
    4. Language and grammatical issues could be rectified. 
    ==============================
    Please submit your revised manuscript by Jun 30 2022 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.
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We look forward to receiving your revised manuscript.

Kind regards,

Reyazul Rouf Mir, PhD

Academic Editor

PLOS ONE

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2. Thank you for stating the following financial disclosure:

“Xiaochun ZHONG, JBYW-AII-2020–29,Fundamental Scientific Research Business Expenses of Central Public Welfare Research Institutes,http://www.mof.gov.cn/index.htm, Conceptualization, Funding acquisition, Review

TaoLIU, 32172110,31701355, National Natural Science Foundation of China, https://www.nsfc.gov.cn/english/site_1/index.html,Funding acquisition, Methodology, Resources, Editing

TaoLIU, BE2020319-14, Jiangsu Key Research and Development Program, http://czt.jiangsu.gov.cn/, Funding acquisition, Methodology, Resources, Editing

TaoLIU, CX(21)3065,CX(21)3063, Special Fund for Independent Innovation of Agricultural Science and Technology in Jiangsu, http://czt.jiangsu.gov.cn/, Funding acquisition, Methodology, Resources, Editing

Shengping LIU, CAAS-ASTIP-2016-AII,Innovation Project of the Chinese Academy of Agricultural Sciences,http://www.mof.gov.cn/index.htm,Funding acquisition, Supervision, review & editing”

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“This research was supported by the National Natural Science Foundation of China (32172110,31701355), Fundamental Scientific Research Business Expenses of Central Public Welfare Research Institutes(JBYW-AII-2020–29), Jiangsu Key Research and Development Program(BE2020319-14), Special Fund for Independent Innovation of Agricultural Science and Technology in Jiangsu(CX(21)3065,CX(21)3063), Innovation Project of the Chinese Academy of Agricultural Sciences(CAAS-ASTIP-2016-AII).”

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“Xiaochun ZHONG, JBYW-AII-2020–29,Fundamental Scientific Research Business Expenses of Central Public Welfare Research Institutes,http://www.mof.gov.cn/index.htm, Conceptualization, Funding acquisition, Review

TaoLIU, 32172110,31701355, National Natural Science Foundation of China, https://www.nsfc.gov.cn/english/site_1/index.html,Funding acquisition, Methodology, Resources, Editing

TaoLIU, BE2020319-14, Jiangsu Key Research and Development Program, http://czt.jiangsu.gov.cn/, Funding acquisition, Methodology, Resources, Editing

TaoLIU, CX(21)3065,CX(21)3063, Special Fund for Independent Innovation of Agricultural Science and Technology in Jiangsu, http://czt.jiangsu.gov.cn/, Funding acquisition, Methodology, Resources, Editing

Shengping LIU, CAAS-ASTIP-2016-AII,Innovation Project of the Chinese Academy of Agricultural Sciences,http://www.mof.gov.cn/index.htm,Funding acquisition, Supervision, review & editing”

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Additional Editor Comments:

The manuscript is dealing with very important subject that is extracting data using images. II have myself also read the manuscript and found this very useful for the scholars/students working in the area. The manuscript needs improvement by keeping in view comments of the reviewer. Some of my own comments are:

1. Improve presentation of data in tables and figures

2. The different steps involved may be presented in the form of flow chart

3. Test files may be provided in the form of supplementary material

4. Language and grammatical issues could be rectified.

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

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2. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

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3. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

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4. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

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5. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: This study proposes a grain counting algorithm with a wide range of applications, which supports the calculation of the number of grains on white paper by taking pictures of mobile phones. The method proposed in this paper has low cost, simple operation and strong applicability. The problems are as follows:

1.Special perspective analysis section, How to explain the missed detection and error of feature points in the sample diagram, it is recommended to expand the description.

2.The code of the volatility is inconsistent with the calculation formula in Evaluation index.

3.In efficiency comparison section,there is no source for the counting machine with mechanical rotation takes 24 s.

4.The reference format of the two documents such as 31-32 is inconsistent with others.

5.It is recommended to remove the content of the lightbox and focus on analyzing the white paper background.

6.Capitalize the first letter in Figure S2.

7.In the evaluation of identification efficiency, "(3) The analysis time did not maintain a linear positive correlation with the number of grains in the picture. There were various factors that affected the running time, such as the tightness of the grains, size of the picture, and shape of the grains., etc." The conclusion of this sentence should be supported by corresponding experiments or cited.

8.Pay attention to the expression of some phrases. Thousand grain, over segmentation, open source, short axis, etc. should have hyphens, "mega pixels" should be changed to "megapixels"; "light boxes" should be changed to "lightboxes".

9.Pay attention to plurals and grammar.such as“0.7 second”changed to“0.7 seconds”, "provide power support" changed to "provide powerful support" , "robust to variety changes" changed to "robust to various changes".

10.Pay attention to the expressions of some statements, such as "There were various factors that affected the running time" changed to "various factors affected……”, "as Lines …… show in Fig 4" changed to "as Lines …… shown in Fig 4".

11.The sentence is not clear: To improve the calculation efficiency and shorten the response time, the original image was specially compressed, but excessive compression affected the accuracy of the algorithm.

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Reviewer #1: No

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Revision 1

Response to Reviewers

ACADEMIC EDITOR:

The manuscript is dealing with very important subject that is extracting data using images. II have myself also read the manuscript and found this very useful for the scholars/students working in the area. The manuscript needs improvement by keeping in view comments of the reviewer. Some of my own comments are:

1.Improve presentation of data in tables and figures

Re: have modified Tables 1 - 5, Fig 2, Fig 7, Fig9, Fig11, Fig 12. The serial number has changed because Fig 10 has been removed.

2. The different steps involved may be presented in the form of flow chart

Re: Adjusted, demonstrated by flow chart.

3. Test files may be provided in the form of supplementary material

Re: The test images have been packaged and used as supplementary material, it contains test images of 6 different grains (144) and test results (excel). It is relatively large, with 460M of storage space.

4. Language and grammatical issues could be rectified.

Re: We have let an expert who is good at English to revise it. Please see the latest manuscript.

Reviewer #1:

This study proposes a grain counting algorithm with a wide range of applications, which supports the calculation of the number of grains on white paper by taking pictures of mobile phones. The method proposed in this paper has low cost, simple operation and strong applicability. The problems are as follows:

1.Special perspective analysis section, How to explain the missed detection and error of feature points in the sample diagram, it is recommended to expand the description.

Re: Modified as suggested. Added example descriptions and also labeled the images. The description is as follows.

As shown in Fig 7, where there was no Cpeak point above due to overlap, and only the Cpeak point below was detected, and calculation result of the corner point algorithm was 1.5, which was actually 2 grains.

2.The code of the volatility is inconsistent with the calculation formula in Evaluation index.

Re: Adjusted, the code should be S2, not S2.

3.In efficiency comparison section,there is no source for the counting machine with mechanical rotation takes 24 s.

Re: Adjusted, added citation to indicate the source of the data

4.The reference format of the two documents such as 31-32 is inconsistent with others.

Re: Adjusted, removed the citation article type

5.It is recommended to remove the content of the lightbox and focus on analyzing the white paper background.

Re: Adjusted, removed the contrast with the lightboxes as the background.

6.Capitalize the first letter in Figure S2.

Re: Adjusted, please see the updated picture.

7.In the evaluation of identification efficiency, "(3) The analysis time did not maintain a linear positive correlation with the number of grains in the picture. There were various factors that affected the running time, such as the tightness of the grains, size of the picture, and shape of the grains., etc." The conclusion of this sentence should be supported by corresponding experiments or cited.

Re: Adjusted, added citation support statement.

8.Pay attention to the expression of some phrases. Thousand grain, over segmentation, open source, short axis, etc. should have hyphens, "mega pixels" should be changed to "megapixels"; "light boxes" should be changed to "lightboxes".

Re: Adjusted as recommended.

9.Pay attention to plurals and grammar.such as“0.7 second”changed to“0.7 seconds”, "provide power support" changed to "provide powerful support" , "robust to variety changes" changed to "robust to various changes".

Re: Adjusted as recommended.

10.Pay attention to the expressions of some statements, such as "There were various factors that affected the running time" changed to "various factors affected……”, "as Lines …… show in Fig 4" changed to "as Lines …… shown in Fig 4".

Re: Adjusted as recommended.

11.The sentence is not clear: To improve the calculation efficiency and shorten the response time, the original image was specially compressed, but excessive compression affected the accuracy of the algorithm.

Re: Modified as suggested, as follows:

The resolution of the original photo was so large that uncompressed operations would greatly increase the algorithm processing time, but excessive compression would reduce the algorithm accuracy. To balance the accuracy and response time, the following conventional resolutions were tested: 1080, 1440, 1920, 2500, and 3000.

Attachments
Attachment
Submitted filename: Response to Reviewers.docx
Decision Letter - Reyazul Rouf Mir, Editor

Research on a rapid identification method for counting universal grain crops:a fast, accurate, low-cost, easy-to-operate, and universal grain counting tool

PONE-D-21-36225R1

Dear Dr.Xiaochun zhong,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

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Kind regards,

Reyazul Rouf Mir, PhD

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

I am very happy to notice that authors has addressed the comments of the reviewer including my own comments in the revised version f the manuscript. Therefore, I have no hesitation in recommending acceptance of this manuscript.

Reviewers' comments:

Formally Accepted
Acceptance Letter - Reyazul Rouf Mir, Editor

PONE-D-21-36225R1

Research on a rapid identification method for counting universal grain crops

Dear Dr. Zhong:

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department.

If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org.

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Thank you for submitting your work to PLOS ONE and supporting open access.

Kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Dr. Reyazul Rouf Mir

Academic Editor

PLOS ONE

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