Peer Review History
| Original SubmissionNovember 2, 2020 |
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PONE-D-20-33503 Attention Based GRU-LSTM for Software Defect Prediction PLOS ONE Dear Dr. Ren, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Jan 30 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols We look forward to receiving your revised manuscript. Kind regards, Le Hoang Son, Ph.D Academic Editor PLOS ONE Journal requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Please update your submission to use the PLOS LaTeX template. The template and more information on our requirements for LaTeX submissions can be found at http://journals.plos.org/plosone/s/latex. 3. Thank you for stating the following in your Competing Interests section: "The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript." Please complete your Competing Interests on the online submission form to state any Competing Interests. If you have no competing interests, please state "The authors have declared that no competing interests exist.", as detailed online in our guide for authors at http://journals.plos.org/plosone/s/submit-now This information should be included in your cover letter; we will change the online submission form on your behalf. Please know it is PLOS ONE policy for corresponding authors to declare, on behalf of all authors, all potential competing interests for the purposes of transparency. PLOS defines a competing interest as anything that interferes with, or could reasonably be perceived as interfering with, the full and objective presentation, peer review, editorial decision-making, or publication of research or non-research articles submitted to one of the journals. Competing interests can be financial or non-financial, professional, or personal. Competing interests can arise in relationship to an organization or another person. Please follow this link to our website for more details on competing interests: http://journals.plos.org/plosone/s/competing-interests Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? Reviewer #1: Yes Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: No Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? Reviewer #1: Yes Reviewer #2: No ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? Reviewer #1: No Reviewer #2: Yes ********** 5. Review Comments to the Author Reviewer #1: • In this paper authors propose a deep learning-based method called DP-AGL (defect prediction through attention-based GRU-LSTM) for increasing reliability of software. Although the idea seems to be interesting but significant improvements are required in paper. • “…internal defect prediction system (WPDP).” Is “WPDP” an abbreviation in section 2.1? If yes then there should be actual words for which this abbreviation is used. • In section 2.3 the term “SLDeep” is introduced without definition. • In section 3 “For this reason, we must always outline the relevant metrics of the code to ap-proximate each slanted defect statement.” However, the reason is not mentioned before. Apparently, it seems some disconnect from previous context. • In section 3, “Then, we marked each code statement in paragraph 3.2.” there is nothing like paragraph 3.2 in paper. • In equation 1 in section 3.2: “The total number of columns in metrics = 32 + max(nTi;j) (1)” is “nT” a single variable? If yes then use one character as it is confusing in current form. • In Algorithm 1 DP-AGL model learning algorithm, don’t use serial numbers with inputs. Serial numbers should only be used with executable statements. • All the equations should be numbered properly. • First Research question (RQ1) is grammatically incorrect. • In abstract authors mention about 32 statement level metrics, however, there is no discussion on these metrics in the entire paper. • Weak experiments and analysis. Compare the proposed model with four to five state of the arts models available in literature. Provide strong discussion with the strengths and weaknesses of the model along with rational. • Poorly written paper, needs serious revision from an expert. The paper should be cross-checked by any English native speaker. ======================== Reviewer #2: 1. Report all 10-fold experimental result for testing and learning. 2. You only report results by considering radius equal to 4, but the proposed method can act differently with the radius equal to 2 3. In “the three legends of accuracy, accuracy, and F measurement” you wrongly write “accuracy” instead of “precision” 4. Explain more about figure 5 and 6. 5. The only different exists between “SLDeep: Statement-level software defect prediction using deep-learning model on static code features” and your submission is in learning model, and DP-AGL model is based on SLDeep, DP-AGL is too similar to SLDeep. Is there any other novelty in your submission? 6. Authors should upload the code associated to their published article so that readers can view and execute it (e.g. GitHub). Upload your code and link it to your article. It will allow users to re-run the analysis and reproduce the results. [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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Attention Based GRU-LSTM for Software Defect Prediction PONE-D-20-33503R1 Dear Dr. Ren, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Le Hoang Son, Ph.D Academic Editor PLOS ONE \\Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? Reviewer #1: Yes Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? Reviewer #1: Yes Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? Reviewer #1: Yes Reviewer #2: Yes ********** 6. Review Comments to the Author Reviewer #1: (No Response) Reviewer #2: (No Response) |
| Formally Accepted |
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PONE-D-20-33503R1 Attention Based GRU-LSTM for Software Defect Prediction Dear Dr. Ren: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Prof. Le Hoang Son Academic Editor PLOS ONE |
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