Peer Review History
| Original SubmissionJanuary 31, 2020 |
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PONE-D-20-02858 High prevalence of false reporting of smoking in lung transplant candidates PLOS ONE Dear Dr. Kneidinger, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. If you are interested in revising this paper, please pay close attention to the reviewer comments, both of which thought the paper topic had merit, but felt that the presentation and analyses presented were inadequate and required major revisions. The topic of the paper is novel so we encourage the authors to consider how they might respond to reviewer suggestions for modifications to the paper. We would appreciate receiving your revised manuscript by May 02 2020 11:59PM. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols Please include the following items when submitting your revised manuscript:
Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. We look forward to receiving your revised manuscript. Kind regards, Michael Cummings, PhD Academic Editor PLOS ONE Journal Requirements: 1. When submitting your revision, we need you to address these additional requirements.
Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at http://www.journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and http://www.journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf 2. In ethics statement in the manuscript and in the online submission form, please provide additional information about the patient records used in your retrospective study. Specifically, please ensure that you have discussed whether all data were fully anonymized before you accessed them and/or whether the IRB or ethics committee waived the requirement for informed consent. If patients provided informed written consent to have data from their medical records used in research, please include this information. 3. Thank you for stating the following financial disclosure: "Disclosure: none". a) Please provide an amended Funding Statement that declares *all* the funding or sources of support received during this specific study (whether external or internal to your organization) as detailed online in our guide for authors at http://journals.plos.org/plosone/s/submit-now.
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[Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: No Reviewer #2: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: I Don't Know Reviewer #2: No ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: No ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The authors used urinary cotinine levels to confirm tobacco abstinence among subjects being evaluated, and/or listed for lung transplantation. They report that active smoking (as evidenced by cotinine levels) is prevalent (~15%) in their lung transplant candidates, and that reliance upon self-reported abstinence is inaccurate for detecting tobacco use. The study is well done, though I do not believe the study design allows them to faithfully backup their conclusions. Most importantly, though patients are restricted from using nicotine replacement therapy, it is possible (perhaps very likely) that many of the positive urinary screens could be related to individuals self-medicating with over-the-counter nicotine replacement therapy. What the finding of this paper illustrates to me is how profoundly addicting nicotine is, as evidenced by patient factors associated with positive nicotine test (those with psychiatric comorbidities, patients with heavier-pack-year exposure, and more recent quit dates). These factors are known to be associated with both higher prevalence of tobacco use, and greater risk of relapse. It is precisely these individuals, who are more susceptible to nicotine withdrawal symptoms, that might self-medicating with over-the-counter nicotine replacement products in order to avoid relapse to combustible tobacco. Major: These individuals should be supported in their attempts at tobacco cessation by any means necessary. Apparently their transplant program prohibits the use of nicotine replacement therapy, which is true of some other programs, but not universally the case for all transplant centers. Apart from the ethical issue of prohibiting use of an effective treatment for an addiction, this prohibition of nicotine replacement therapy probably limits the validity of their conclusions, in that the study as described could not reliably distinguish between surreptitious use of combustible tobacco versus pharmacologic use of NRT. There are alternative biomarkers which, though more expensive, are also more specific to combustible tobacco. Minor: the statement in the 2nd to final paragraph of the Results section indicates that the "...number of patients falsely declaring nicotine abstinence increased over the transplant stage" but the data shown in this regard in table 4 do not appear to have appropriate statistical confirmation. While the numbers do increase, the confidence intervals about these averages are likely too large to support a 'trend'. Reviewer #2: Authors present an interesting manuscript on misreporting of smoking status in lung transplant patients. Data have some unique findings and the cohort represents the most recent analysis for this type of cohort. There are several areas where presentation of data in a different format would make information much more useful and clear. Standard calculations for sensitivity, specificity, NPV, and PPV would help as would a flowchart and breakdown of cotinine values. There are suggestions for reanalysis that could make this manuscript much more interesting and valuable, but the value of the data could be very high. References for urinary and serum cotinine values should be noted. Most of Table 1 is not useful to the manuscript. PFTs could be eliminated and simple description of age, sex, and BMI could be presented as a single line of text. Table 2 is also not particularly helpful and may be more useful as a supplementary table in lieu of suggestions below. The presentation of results is somewhat confusing. The most interesting findings are in Table 4. It would be much more intuitive if the following were presented perhaps as a flowchart: Number of patients screened Number tested Number with positive cotinine vs. negative cotinine Number who reported no smoking who tested positive vs. number who reported smoking and tested positive AND number who reported no-smoking who tested negative vs. number who reported smoking who tested negative How many patients reported never smoking according to cotinine results? Authors should strongly consider a simple 2x2 table with calculations for sensitivity, specificity, NPV, and PPV according to self-report vs. cotinine positive. Consideration for these according to Stage 1-3 might be interesting as it appears these change closer to waitlisting. In the results, the statement “patients with a positive test were more often former smokers (82.6% vs 63.8%, p<0.001)” does not make sense. Throughout the manuscript, statements are slightly misleading regarding percentages. For example, in the 6th paragraph of the Results there is a statement “The number of patient falsely declaring nicotine abstinence increased over the transplant stage, with 83%, 86.2% and 90% in stage 1, 2 and 3, respectively.” I believe this should state “The number of cotinine positive patients falsely declaring nicotine abstinence…” These statements need correction throughout including in the abstract. In Table 3, annotation “a” is not in the table. The binary selection of positive cotinine values provides limited information. A scatterplot of cotinine values for serum and urine over Stage 1-3 would provide significant useful information to see distribution of values change over stage. This would provide an indirect representation of whether cotinine values are generally large, small, or somewhere in between. The last paragraph of the Results is not particularly useful. The final sentence of the abstract is not well supported. From the data, it appears that 85% of patients did not smoke with 81/92/95% of patients not smoking at Stage 1/2/3. Of patients who smoked, the accuracy did not appear to change much during stage. It is possible that patients who were never smokers (not clearly presented here) could be very accurate as would patients who report current smoking. Data suggest that quitting more than 1 year ago resulted in clearly more accuracy than quitting within the past year. Authors need to better consider the data for more representative conclusions. It is anticipated that the above changes may result in more definitive discussion measures including where measuring cotinine is most useful. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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PONE-D-20-02858R1 High prevalence of falsely declaring nicotine abstinence in lung transplant candidates PLOS ONE Dear Dr. Kneidinger, Thank you for submitting your revised manuscript to PLOS ONE. After careful consideration, we feel that it has merit. However, before we can accept this paper in PLOS ONE we would like you to address the comments from the 2nd reviewer who requested some minor revisions to the discussion of the paper. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. We would appreciate receiving your revised manuscript by Jul 03 2020 11:59PM. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols Please include the following items when submitting your revised manuscript:
Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. We look forward to receiving your revised manuscript. Kind regards, Michael Cummings, PhD Academic Editor PLOS ONE [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: (No Response) ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Though I am still concerned that the study design does not permit fully addressing the study question, I believe the authors have raised valid points and acknowledged the limitations of their data in support of the conclusions. IN doing so the paper has been strengthened and I support the authors interpretation of their findigs. Reviewer #2: Results are much clearer and findings are very interesting. From the revised manuscript, the significant finding is that 85% of patients who smoked (or used NRT) did not report this. This is striking and I would offer that the opening to the Discussion could better reflect this finding. This is certainly more interesting than higher rates in COPD or pack years. I would recommend reorganizing the Discussion around this theme and opening with this finding, but otherwise much improved. In the discussion, paragraph starting with “interestingly, approximately 85% of patients…” this sentence doesn’t make sense. I think the authors are trying to state “Approximately 85% of patients who smoke or use nicotine products do not accurately self-report use, supporting the previous finding that active smoking in underreported by patients with chronic lung disease” In the final paragraph of the discussion, the first sentence appears incorrect and could perhaps conclude that while active smoking is present in a minority of patients, there is a high rate of misrepresentation that warrants biochemical confirmation, particularly in patients reporting an ever-smoking history or quitting smoking within the past year. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 2 |
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High prevalence of falsely declaring nicotine abstinence in lung transplant candidates PONE-D-20-02858R2 Dear Dr. Kneidinger, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Michael Cummings, PhD Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
| Formally Accepted |
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PONE-D-20-02858R2 High prevalence of falsely declaring nicotine abstinence in lung transplant candidates Dear Dr. Kneidinger: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Michael Cummings Academic Editor PLOS ONE |
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