Peer Review History

Original SubmissionOctober 18, 2019
Decision Letter - Zuogang Peng, Editor

PONE-D-19-29177

Dredging activity and associated sound have negligible effects on adult Atlantic sturgeon migration to spawning habitat in a large coastal river

PLOS ONE

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Academic Editor

PLOS ONE

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9. Please amend either the title on the online submission form (via Edit Submission) or the title in the manuscript so that they are identical.

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Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: No

**********

2. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: No

**********

3. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: Yes

**********

4. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: No

**********

5. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: Overall this is a very well written manuscript and the authors are commended for their efforts.

The study sample size is extremely limited regarding females. Suggesting dredging does not have an impact on adult ATS migration is a rather sweeping claim and a bit presumptuous given the study’s samples and geographic size of the study area. I strongly encourage the authors limit this study to male subjects or address the limited number of females in the study within the discussion.

In figure 1, it is unclear what the colors along the dredge lines indicate (“the colored dots within the channel are where the hydraulic-cutterhead dredge was working during the study period”). Do warmer colors signify the amount of time a dredge working in an area or the time of year the dredge was working? Please clarify.

To this point, why did the authors set up the VPS at the downstream site over the upstream site? Please incorporate the reasoning into the manuscript.

The authors report the number of fish in the study area used in the hot spot analysis but was there a minimum number of positions per fish required? Did these positions need to be captured within a certain window of time, similar to the swimming speed requirements? Incorporating a fish's positions in July versus September might be very different. Was a seasonal component or individual effect included? The authors elude to the differences in behaviors across seasons so this should be accounted for in the analyses.

Figure 7 is very interesting and I believe the authors should expand text in the discussion around this figure. Its very interesting that in plot C the fish are in a very narrow cluster along the channel (presumed preferred habitat) but in plots A and B the cluster is much broader and fish are avoiding banks. To me, this suggests dredging does influence migratory behavior. From your analyses it does not appear to impact the upstream or downstream movement or meandering in the lower dredging area but there appears to be an impact that should be discussed.

Remove or expand figure 8. Either include all fish's paths or none.

In general, the manuscript's discussion could be expanded and incorporate related studies.

Reviewer #2: The study assesses the effects of dredging on migration of sturgeon for purportedly spawning purposes. It is laudable in the sense that the study uses existing fish with transmitters and essentially, employs an array of Vemco receivers. However, my main two concerns are the writing styles and the interpretations or inferences from their study.

I found this manuscript to be very difficult to read and follow given the number of inverted, double negative and redundant sentences. I have made annotations on a pdf of your manuscript to highlight some problem areas and suggested some potential edits. I think you would be able to relay your message much more effectively if you conducted a very hard edit on your manuscript.

Your study was about the affects of dredging on migrating sturgeon, I recommend you adhere to that in your conclusions. You cannot make any statement about spawning success or efficacy of policy on recruitment because you didn't test it in your study. I have provided comments about the structure of your manuscript. For example, your conclusion is not a conclusion. You shouldn't be presenting new material in the conclusion. I think your abstract captures your study nicely, your conclusion doesn't.

Minor comments

Can you conduct statistical analyses to support your observations on initiation of movement (e.g., logistic regression or GLM using temperature and upstream movement)? It could strengthen your study.

This study was conducted predominately on males. I understand that you are relying on previously transmittered fish and therefore have to rely on movement, but could you address potential limitations in your discussion (e.g., sex or size effect). Additionally, could you provide metrics of the fish in the study with the caveat that they were of that size upon sample.

Several figures are, in my opinion, not necessary (e.g., Figures 2 and 4); Figure 6 would be better if it was a histogram.

Do not start sentences with acronyms.

**********

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Reviewer #1: No

Reviewer #2: No

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Attachments
Attachment
Submitted filename: PONE-D-19-29177_reviewer.pdf
Revision 1

1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at

http://www.journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and http://www.journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf

2. In your Methods section, please provide additional location information of the study area, including geographic coordinates for the data set if available.

A figure (Figure 1) was added to provide additional location information. The lat/lon points for the fish are also in the supplemental information.

3. In your Methods section, please provide additional information regarding the permits you obtained for the work. Please ensure you have included the full name of the authority that approved the field site access and, if no permits were required, a brief statement explaining why.

Added a line saying this was public area so no special permits were required to access the study site.

4. We note that you have indicated that data from this study are available upon request. PLOS only allows data to be available upon request if there are legal or ethical restrictions on sharing data publicly. For more information on unacceptable data access restrictions, please see http://journals.plos.org/plosone/s/data-availability#loc-unacceptable-data-access-restrictions.

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a) If there are ethical or legal restrictions on sharing a de-identified data set, please explain them in detail (e.g., data contain potentially sensitive information, data are owned by a third-party organization, etc.) and who has imposed them (e.g., an ethics committee). Please also provide contact information for a data access committee, ethics committee, or other institutional body to which data requests may be sent.

b) If there are no restrictions, please upload the minimal anonymized data set necessary to replicate your study findings as either Supporting Information files or to a stable, public repository and provide us with the relevant URLs, DOIs, or accession numbers. For a list of acceptable repositories, please see http://journals.plos.org/plosone/s/data-availability#loc-recommended-repositories.

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Added Ethics Statement at the beginning of the methods section.

7. We note that Figures 1, 3, 7 and 8 in your submission contain map images which may be copyrighted. All PLOS content is published under the Creative Commons Attribution License (CC BY 4.0), which means that the manuscript, images, and Supporting Information files will be freely available online, and any third party is permitted to access, download, copy, distribute, and use these materials in any way, even commercially, with proper attribution. For these reasons, we cannot publish previously copyrighted maps or satellite images created using proprietary data, such as Google software (Google Maps, Street View, and Earth). For more information, see our copyright guidelines: http://journals.plos.org/plosone/s/licenses-and-copyright.

We require you to either (1) present written permission from the copyright holder to publish these figures specifically under the CC BY 4.0 license, or (2) remove the figures from your submission:

1. You may seek permission from the original copyright holder of Figures 1, 3, 7 and 8 to publish the content specifically under the CC BY 4.0 license.

We recommend that you contact the original copyright holder with the Content Permission Form (http://journals.plos.org/plosone/s/file?id=7c09/content-permission-form.pdf) and the following text:

“I request permission for the open-access journal PLOS ONE to publish XXX under the Creative Commons Attribution License (CCAL) CC BY 4.0 (http://creativecommons.org/licenses/by/4.0/). Please be aware that this license allows unrestricted use and distribution, even commercially, by third parties. Please reply and provide explicit written permission to publish XXX under a CC BY license and complete the attached form.”

Please upload the completed Content Permission Form or other proof of granted permissions as an "Other" file with your submission.

In the figure caption of the copyrighted figure, please include the following text: “Reprinted from [ref] under a CC BY license, with permission from [name of publisher], original copyright [original copyright year].”

2. If you are unable to obtain permission from the original copyright holder to publish these figures under the CC BY 4.0 license or if the copyright holder’s requirements are incompatible with the CC BY 4.0 license, please either i) remove the figure or ii) supply a replacement figure that complies with the CC BY 4.0 license. Please check copyright information on all replacement figures and update the figure caption with source information. If applicable, please specify in the figure caption text when a figure is similar but not identical to the original image and is therefore for illustrative purposes only.

The following resources for replacing copyrighted map figures may be helpful:

USGS National Map Viewer (public domain): http://viewer.nationalmap.gov/viewer/

The Gateway to Astronaut Photography of Earth (public domain): http://eol.jsc.nasa.gov/sseop/clickmap/

Maps at the CIA (public domain): https://www.cia.gov/library/publications/the-world-factbook/index.html and https://www.cia.gov/library/publications/cia-maps-publications/index.html

NASA Earth Observatory (public domain): http://earthobservatory.nasa.gov/

Landsat: http://landsat.visibleearth.nasa.gov/

USGS EROS (Earth Resources Observatory and Science (EROS) Center) (public domain): http://eros.usgs.gov/#

Natural Earth (public domain): http://www.naturalearthdata.com/

8. Thank you for stating the following in your Competing Interests section:

'No'

Please complete your Competing Interests on the online submission form to state any Competing Interests. If you have no competing interests, please state "The authors have declared that no competing interests exist.", as detailed online in our guide for authors at http://journals.plos.org/plosone/s/submit-now

This information should be included in your cover letter; we will change the online submission form on your behalf.

Please know it is PLOS ONE policy for corresponding authors to declare, on behalf of all authors, all potential competing interests for the purposes of transparency. PLOS defines a competing interest as anything that interferes with, or could reasonably be perceived as interfering with, the full and objective presentation, peer review, editorial decision-making, or publication of research or non-research articles submitted to one of the journals. Competing interests can be financial or non-financial, professional, or personal. Competing interests can arise in relationship to an organization or another person. Please follow this link to our website for more details on competing interests: http://journals.plos.org/plosone/s/competing-interests

9. Please amend either the title on the online submission form (via Edit Submission) or the title in the manuscript so that they are identical.

I’m sorry but we can not tell a difference between what is on the online submission form and the title on the manuscript.

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: No

________________________________________

2. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: No

________________________________________

3. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: Yes

________________________________________

4. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: No

________________________________________

5. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: Overall this is a very well written manuscript and the authors are commended for their efforts.

The study sample size is extremely limited regarding females. Suggesting dredging does not have an impact on adult ATS migration is a rather sweeping claim and a bit presumptuous given the study’s samples and geographic size of the study area. I strongly encourage the authors limit this study to male subjects or address the limited number of females in the study within the discussion.

We understand that the sample size is highly skewed towards males over females. However, this does not change the fact that all the females in the study moved passed the dredge and reached spawning habitat. Even with the small female sample size, the claim is still valid that the dredge did not have any noticeable effects on adult sturgeon moving up to spawning habitat. We added text in the discussion to point out there was a relatively small amount of females but the point is still valid.

In figure 1, it is unclear what the colors along the dredge lines indicate (“the colored dots within the channel are where the hydraulic-cutterhead dredge was working during the study period”). Do warmer colors signify the amount of time a dredge working in an area or the time of year the dredge was working? Please clarify.

The different colors show where the dredge was working each day. We added text to the figure description. The figure would have been too crowded to show what color each day represents; however, the description of when the dredge was working on each day is described later in the methods section.

To this point, why did the authors set up the VPS at the downstream site over the upstream site? Please incorporate the reasoning into the manuscript.

We did not have enough receivers to cover both areas. We chose the narrower river width so our receivers would cover most of the overall width of the river. We added text to the methods section.

The authors report the number of fish in the study area used in the hot spot analysis but was there a minimum number of positions per fish required? Did these positions need to be captured within a certain window of time, similar to the swimming speed requirements?

No, all the points that fit the vetting criteria described in the position analysis were used to the hot spot analysis. This is stated in the methods section. If the only points used for the hot spot analysis had to pass the same conditions as the swim speed analysis there would not have been enough data to the analysis to show hot and cold spots.

Incorporating a fish's positions in July versus September might be very different. Was a seasonal component or individual effect included? The authors elude to the differences in behaviors across seasons so this should be accounted for in the analyses.

We agree that there might be a seasonal component in regards to pre/post spawn fish. The fish are moving back and forth during from July-November and it is possible that pre and post spawn fish move differently. During the July/early September most the fish were making their initial run to spawning grounds while in late September/November the fish were leaving for the year. Since dredging ended in the middle of September, comparing figures 7a and 7b to figure 7c is like taking into account pre and post spawning movements.

Figure 7 is very interesting and I believe the authors should expand text in the discussion around this figure. Its very interesting that in plot C the fish are in a very narrow cluster along the channel (presumed preferred habitat) but in plots A and B the cluster is much broader and fish are avoiding banks. To me, this suggests dredging does influence migratory behavior. From your analyses it does not appear to impact the upstream or downstream movement or meandering in the lower dredging area but there appears to be an impact that should be discussed.

This is a common misinterpretation of the figure, we thought it as well but had ERSI (maker of the tool) explain things to us. So according to the analysis in general the fish were closer to the channel, and therefore the dredge, and avoided the fringes (7a and b) compared to when the dredge had stopped working (7c). The fish were more dispersed when the dredge was not working which means the dredge had some sort of attraction effect. This is highly unlikely and is already noted in the discussion section. The only way to prove this would be to have the dredge work during October/November and not during August/September while still having the same water quality parameters. The dredge can not wait so late in the season to work because shipping would have to stop.

Remove or expand figure 8. Either include all fish's paths or none.

If all paths are plotted (170) it would be just on big blur because all the lines would be overlapping and wouldn’t make sense. We think it helps provide a scale to how close the fish swam passed the active dredge.

In general, the manuscript's discussion could be expanded and incorporate related studies.

The discussion was expanded; however, the only truly related study that tracks telemetered fish around an active dredge is already cited in this paper.

Reviewer #2: The study assesses the effects of dredging on migration of sturgeon for purportedly spawning purposes. It is laudable in the sense that the study uses existing fish with transmitters and essentially, employs an array of Vemco receivers. However, my main two concerns are the writing styles and the interpretations or inferences from their study.

I found this manuscript to be very difficult to read and follow given the number of inverted, double negative and redundant sentences. I have made annotations on a pdf of your manuscript to highlight some problem areas and suggested some potential edits. I think you would be able to relay your message much more effectively if you conducted a very hard edit on your manuscript.

We conducted a very hard edit to the manuscript. We might have a different writing style from reviewer 2. We would like to point out the reviewer 1 said the manuscript was very well written.

Your study was about the affects of dredging on migrating sturgeon, I recommend you adhere to that in your conclusions. You cannot make any statement about spawning success or efficacy of policy on recruitment because you didn't test it in your study. I have provided comments about the structure of your manuscript. For example, your conclusion is not a conclusion. You shouldn't be presenting new material in the conclusion. I think your abstract captures your study nicely, your conclusion doesn't.

The text was modified to stating that adults reached spawning habitat. We addressed the comments in the PDF.

Minor comments

Can you conduct statistical analyses to support your observations on initiation of movement (e.g., logistic regression or GLM using temperature and upstream movement)? It could strengthen your study.

We would have to look at multiple years of data and beyond the scope of this study. Physical cues to sturgeon movements are going to be a major point for another paper we plan to write.

This study was conducted predominately on males. I understand that you are relying on previously transmittered fish and therefore have to rely on movement, but could you address potential limitations in your discussion (e.g., sex or size effect). Additionally, could you provide metrics of the fish in the study with the caveat that they were of that size upon sample.

This was addressed in comments by reviewer 1. These fish were proven to be adults during initial capture. Most we tagged over 4 years prior to this study and growth rate is highly variable due to the fact that some years adults skip spawning and likely grow more than fish that do spawn and whether the fish spend their ocean time north or south of VA. We think there are too many variables to account for a size effect during this study when there is so much variability of growth from fish tagged 4+ years ago.

Several figures are, in my opinion, not necessary (e.g., Figures 2 and 4); Figure 6 would be better if it was a histogram.

Figure 4 will be removed. However, the setup shown in figure 2 is something that researchers are always asking for us to explain. We feel keeping figure 2 will help other conduct their own VPS studies.

Do not start sentences with acronyms.

Decision Letter - Zuogang Peng, Editor

Dredging activity and associated sound have negligible effects on adult Atlantic sturgeon migration to spawning habitat in a large coastal river

PONE-D-19-29177R1

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Formally Accepted
Acceptance Letter - Zuogang Peng, Editor

PONE-D-19-29177R1

Dredging activity and associated sound have negligible effects on adult Atlantic sturgeon migration to spawning habitat in a large coastal river

Dear Dr. Balazik:

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on behalf of

Dr. Zuogang Peng

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