Peer Review History
| Original SubmissionDecember 20, 2019 |
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PONE-D-19-35297 Soil solution in Swiss forest stands: a 20 year's time series PLOS ONE Dear Dr. Braun, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. The two reviewers have very different comments on your manuscript. Reviewer 2 is more critical of the manuscript and raise important concerns regarding the objectives, context, title and presentation of the data. It is an impressive data set, but the objectives of the paper should be clear, and the analysis should support the objectives. I have recommended major revisions. Please ensure you address all reviewer comments in the revised manuscript. We would appreciate receiving your revised manuscript by Mar 29 2020 11:59PM. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols Please include the following items when submitting your revised manuscript:
Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. We look forward to receiving your revised manuscript. Kind regards, Julian Aherne Academic Editor PLOS ONE Additional Editor Comments (if provided): The two reviewers have very different comments on your manuscript. Reviewer 2 is more critical of the manuscript and raise important concerns regarding the objectives, context, title and presentation of the data. It is an impressive data set, but the objectives of the paper should be clear, and the analysis should support the objectives. I have recommended major revisions. Journal Requirements: When submitting your revision, we need you to address these additional requirements: 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at http://www.plosone.org/attachments/PLOSOne_formatting_sample_main_body.pdf and http://www.plosone.org/attachments/PLOSOne_formatting_sample_title_authors_affiliations.pdf 2. Thank you for stating the following in the Acknowledgments Section of your manuscript: "The author acknowledges the financial support by the Federal Office for the Environment and by the cantons AG, BE, BL, BS, FR, SO, TG, ZH and the environmental offices of the cantons in Central Switzerland." We note that you have provided funding information that is not currently declared in your Funding Statement. However, funding information should not appear in the Acknowledgments section or other areas of your manuscript. We will only publish funding information present in the Funding Statement section of the online submission form. Please remove any funding-related text from the manuscript and let us know how you would like to update your Funding Statement. Currently, your Funding Statement reads as follows: "SB Federal Office of the Environment Switzerland (measurements and manuscript writing)" 3. Thank you for stating the following in your Competing Interests section: "NO" Please complete your Competing Interests on the online submission form to state any Competing Interests. If you have no competing interests, please state "The authors have declared that no competing interests exist.", as detailed online in our guide for authors at http://journals.plos.org/plosone/s/submit-now This information should be included in your cover letter; we will change the online submission form on your behalf. Please know it is PLOS ONE policy for corresponding authors to declare, on behalf of all authors, all potential competing interests for the purposes of transparency. PLOS defines a competing interest as anything that interferes with, or could reasonably be perceived as interfering with, the full and objective presentation, peer review, editorial decision-making, or publication of research or non-research articles submitted to one of the journals. Competing interests can be financial or non-financial, professional, or personal. Competing interests can arise in relationship to an organization or another person. Please follow this link to our website for more details on competing interests: http://journals.plos.org/plosone/s/competing-interests 4. Please include captions for your Supporting Information files at the end of your manuscript, and update any in-text citations to match accordingly. Please see our Supporting Information guidelines for more information: http://journals.plos.org/plosone/s/supporting-information. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: No ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: No ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No Reviewer #2: No ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: No ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: This is a highly relevant and thoroughly elaborated. It is quite interesting to read that the soil solution monitoring has been continued for 20 years and the future ahead. The technical description of the approach and the discussion are very well written. The quality of the text is high and it could be published as it is. Nevertheless, there is always room for improvement: 1/ The introduction of the manuscript is reflecting the state of knowledge of 30 years ago. At that time there was the concern that acidification threatens European forests, and 20 years ago it was stated that N eutrophication is a major concern. There have been many papers since them that put these concerns into perspective. A good source of information of such reviews are the TAMM Reviews of Forest Ecology and Management. - I recommend to either state in the Introduction that the text is reflecting the knowledge when the monitoring programmes were initiated, or (preferred) to expand the Introduction by more recent references. 2/ The methods section is quite complex. The author repeatedly refers to extensive manuals where the single steps are described. Presumingly, very few readers will look up these sources. -- Considering that supplementary material comes with the paper, it would be desirable to show the code that had been used. -- Also a statement on confidence in the invidual steps would be interesting. E.g. how well does SAFE reflect weathering in the field? 3/ The full data sets are not available. - If this is the data policy of the institute, a statement on data ownership could be made. Reviewer #2: The author has evaluated the chemistry of soil solution at a number of Swiss forest sites with respect to their excedance of critical limits for acidity and nitrate. In addition some models were run to relate the critical limits to site, stand, atmospheric inputs and a number of other factors. First off, the premise of the paper is not sound. Line 28 states ‘Soil acidification is a serious threat’. This is not the case. Soil acidification is a natural process of soil development in temperate climates where there is a precipitation surplus. The objectives are not clearly stated and the results presented e.g. Ca budgets do not correspond to the stated aim on Line 64-66. Line 66 states that soil solution chemistry will be related to forest health but this is not presented. No evidence is presented to indicate that forests in Switzerland are suffering from the effects of acidification from atmospheric deposition of S and N. Is there forest health data available? Foliar chemistry for example? Evidence of magnesium deficiency or yellowing of needles? The title of the paper is 'Soil solution in Swiss forest stands: a 20 year's time series' but no time series are presented. It is not clear what the purpose of the N assessment is and how it relates to acidification and what it contributes to the paper. The author states that ‘N leaching may not always be a good eutrophication indicator’ [L22-23]. This has already been well established in the literature e.g. Lovett, G.M., Goodale, C.L. A New Conceptual Model of Nitrogen Saturation Based on Experimental Nitrogen Addition to an Oak Forest. Ecosystems 14, 615–631 (2011). https://doi.org/10.1007/s10021-011-9432-z A lot of the literature cited is quite old e.g. refs 11, 16, 18, 19, 25, 27, 30. A lot of new knowledge has been published in relation to the issue of soil acidification by atmospheric deposition that the author should review. In addition, a lot of work done on Swiss forest monitoring specifically with respect to this issue, but this work is not cited. I would encourage the author to review these papers and position their work within this context. Sample below Pannatier, E.G., Thimonier, A., Schmitt, M. et al. A decade of monitoring at Swiss Long-Term Forest Ecosystem Research (LWF) sites: can we observe trends in atmospheric acid deposition and in soil solution acidity?. Environ Monit Assess 174, 3–30 (2011). https://doi.org/10.1007/s10661-010-1754-3 Graf Pannatier, E., Walthert, L. and Blaser, P. (2004), Solution chemistry in acid forest soils: Are the BC : Al ratios as critical as expected in Switzerland?. Z. Pflanzenernähr. Bodenk., 167: 160-168. doi:10.1002/jpln.200321281 Thimonier, A., Graf Pannatier, E., Schmitt, M., Waldner, P., Walthert, L., Schleppi, P., et al. (2010a). Does exceeding the critical loads for nitrogen alter nitrate leaching, the nutrient status of trees and their crown condition at Swiss Long-term Forest Ecosystem Research (LWF) sites? European Journal of Forest Research, 129, 443–461. Waldner, P., Schaub, M., Graf Pannatier, E., Schmitt, M., Thimonier, A., & Walthert, L. (2007). Atmospheric deposition and ozone levels in Swiss Forests: Are critical values exceeded? Environmental Monitoring and Assessment, 128, 5–17. I question many aspects of the analysis. Is Bc:Al expressed as mols of charge here? Is aluminium total Al? What is the basis that an exceedance >1% of the observations [Line 156] is biologically significant? In calcareous soils, the Al concentrations will be negligible, which makes the Bc:Al ratio very large. This has a spurious effect on the statistical analysis e.g. Figure 2 has Bc:Al values up to 10,000. In the same figure Bc:Al for soil depth >70cm is shown, but Bc:Al is an indicator for stress on fine plant root yet the author states that root depth only extended to 60cm [L173]. So I don’t think Bc:Al below this depth is relevant. For a study of acidification, the analysis should be confined to those soils in the Al buffering pH range. The regression analysis is not appropriate. It is not clear what the objective of this analysis is and many of the relationships have already been established in the literature. For example, why is Bsat a predictor for Bc:Al in soil solution? Bsat should be considered a response variable and not a predictor in this case. Also Bsat to Bc:Al relationships have already been developed and are used in the critical loads modelling e.g. Gaines-Thomas and Gapon equations. I would also question the data used as an input to the model. The author states that the number of sites ranges from ‘9 to 47’. I don’t think it is appropriate to have uneven numbers of observations for different sites. Also it is not clear how the 5 year time interval [L186] was generated for predictors. Was soil Bsat, Soil C:N measured every 5 years? Was the weathering rate recalculated for every 5 year interval? Time intervals for a particular site are not independent observations – was this accounted for in the model? The relationship presented in Figure 2, between pHCaCl2 and Bc:Al is spurious. I don’t think the results presented in Table 3 are valid. The levels of significance are likely a result of the large number of observations used. If N leaching has decreased and N deposition is the main driver of acidity [L18-19] then why is the rate of soil acidification increasing [L17-18, L264]? Why wasn’t N deposition significant in the model of soil acidification (Table 3)? In Fig 3 the ca leaching rate is greater than deposition (and weathering + deposition. What is the proposed driver of this Ca loss, if N deposition is decreasing? How do these values relate to other published values for weathering? Was the weathering model calibrated? It has previously been reported that soil solution in acid pseudogleyed horizons can be influenced by underlying clay soils (Graf Pannatier 2004). Was this taken into account in the analysis? In relation to Fig. 5 it is not clear what this figure is trying to show. Why not simply plot Bc:Al change with time? Again the linear relationships don’t seem valid. The statistical relationships in figures 6 to 8 don’t seem valid, but seem to be driven by a few outliers. Why does N leaching extend above 150KgN? The English needs to be improved and there are numerous grammatical errors and formatting errors. This makes the paper difficult to read. some examples.. L374 comma at the end of line L13; ‘ranging’ instead of ‘growing’ L18: ‘Main driver’ – should be ‘The main driver..’ L36 'concerns on forest health'..should be 'concerns about forest health' The conclusions are not supported by the findings. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Robert Jandl Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Please note that Supporting Information files do not need this step.
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| Revision 1 |
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PONE-D-19-35297R1 Soil solution in Swiss forest stands: a 20 year's time series PLOS ONE Dear Dr. Braun, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. ============================== All reviewers agree that this manuscript is an important contribution to the literature, especially given the long-term data set. Further, it is noted that the revised manuscript is much improved. Nonetheless, two of the reviewers have indicated that further revisions are required, specifically with respect to clarification of the research question and hypothesis, presentation of data, and the description of the data analysis. ============================== We would appreciate receiving your revised manuscript by Jun 12 2020 11:59PM. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols Please include the following items when submitting your revised manuscript:
Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. We look forward to receiving your revised manuscript. Kind regards, Julian Aherne Academic Editor PLOS ONE Additional Editor Comments (if provided): Dear Sabine Braun, please note that your manuscript was sent out for further review as one of the initial reviewers (the more critical of the two) was unavailable. All reviewers agree that this manuscript is an important contribution to the literature, especially given the long-term data set. Further, it is noted that the revised manuscript is much improved. Nonetheless, two of the reviewers have indicated that further revisions are required, specifically with respect to clarification of the research question and hypothesis, presentation of data, and the description of the data analysis. while I have indicated 'Major Revisions' are required in line with the recommendations of the reviewers, I believe that these are minor revisions and that they can be easily addressed. I look forward to seeing your revised manuscript. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #3: (No Response) Reviewer #4: (No Response) ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #3: Yes Reviewer #4: No ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #3: I Don't Know Reviewer #4: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #3: Yes Reviewer #4: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #3: Yes Reviewer #4: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: I want to congratulate the authors to an exceptional manuscript. The text has a high potential to be used in classrooms. The coverage of the topic is comprehensive. A particular value is the availability of the code of the data evaluation. The description of the data has the same high quality as the main text itself. I am greatly impressed by the quality of the submission and hope that it will find wide recognition. Reviewer #3: This is an interesting analysis of a 20 year's time series of measured element concentrations in forests soil solution in relation to different environmental variables. The work adds to current knowledge on progressive acidification of forest soils intensified by atmospheric nitrogen and sulphur deposition. The authors elaborated further on a first version of their manuscript taking into account various comments of two reviewers. I think this has substantially improved the overall quality of the paper, but there are still some issues that need to be solved before it can be published, particularly concerning the modeling analysis. detailed comments L18: ‘Acidification indicators remained stable at high levels...’ : I think this terminology is too vague for an abstract. Could you please formulate it in more concrete terms? L23 (and further): The term ‘N leaching’ is used throughout the paper, which I think is not entirely correct, since dissolved organic forms of N (DON) are not included. I suggest to consistently write ‘nitrate leaching’ (assuming that ammonium leaching is negligible). L25-26: I suggest to drop the following sentence: ‘Therefore, we suggest a restricted use of N leaching as an eutrophication indicator’. Plenty of studies have shown that NO3 leaching is an important indicator of eutrophication/N saturation, but since forests are natural ecosystems with a huge variety in environmental conditions there logically also must be exceptions. L58-59: as the BC/Al ratio is defined here, I think you should also mention what you mean with base cations (Ca2+ + K+ + Mg2+) in this sentence. L69-71: I suggest to refer to the groundwater directive here. DIRECTIVE 2006/118/EC OF THE EUROPEAN PARLIAMENT AND OF THE COUNCIL of 12 December 2006 on the protection of groundwater against pollution and deterioration (https://eur-lex.europa.eu/LexUriServ/LexUriServ.do?uri=OJ:L:2006:372:0019:0031:EN:PDF). L137 and L178: it is not clear to me whether and how the alkalinity data were actually used in your analysis. I assume ANC was calculated rather as the balance between anions and cations? If alkalinity itself was not used, the corresponding part of the sentence in L137 should be removed. L224 and Fig. 2: a quadratic term was used in order to allow modeling of a non-linear relationship. This approach has not been described in the materials and methods section. I actually wonder if a linear mixed additive model (gamm) applied on the untransformed data would not be more appropriate here, as it would probably be more easy to understand. The current graphs are somewhat misleading: it looks as if the curve flattens of at higher BS, but instead it is the opposite: if the Y-axis would be in regular units instead of log-scale, one would see an exponentially increasing curve. L226: I do not understand this. BC/Al ratio at the start of the 5 year period was included as a predictor for the BC/Al ratio? Section 3.1.3 and 3.1.4: I have some doubts on the modeling analysis. The number of independent variables in the initial models (about 10) is actually quite large for the number of sites (n = 47). While there is no general rule of restriction, a large number of variables could easily lead to overfitting of the model and thus wrong interpretation and results. I am not entirely convinced that the applied backward selection with AIC/BIC excluded the least important variables. Instead, it might have been a better approach to restrict the initial number of variables (pre-selection) based on present knowledge or to do a forward selection. Table 2 and 3: The data for the dependent variables BC/Al ratio and N leaching were log-transformed, as mentioned in the caption of both tables. Log-transformation changes the relationship between the dependent and independent variables and may therefore lead to a wrong interpretation of the results. This choice should thus be clearly motivated, which information is currently missing in the materials and methods section. L253-254: you wrote that normality and homogeneity of variance of the residuals was checked, but it is necessary to show also graphs of normalised residuals vs. fitted values and of normalised residuals against each independent variable in the model, in order to allow the reader to judge the validity of models. In L258-259 it is stated that this information is included in the Supplementary information, but I couldn’t find it there. Reviewer #4: This manuscript assesses recent soil acidification in Swiss forest stands in response to atmospheric acidic deposition using soil solution chemistry measured over the last 20 years. This is a valuable dataset, due to the large number of plots that have been monitored for many years in different soil types across Switzerland in two major forest types (spruce and beech) and exposed to different levels of atmospheric deposition. I was not reviewer of the first version of the manuscript. It seems that the authors have made a great deal of effort in improving the quality of the manuscript. However, I have major concerns about the quality of the revised manuscript: 1) there is no research questions and hypothesis, 2) the description of the current state of knowledge is thin and the authors’ results are not integrated in a broader context, 3) the way of presenting some results is questionable. I explain the three points: 1) Missing research question: the authors do not ask any research question and do not postulate any hypotheses. It is therefore difficult to assess whether their statistical analyses allow them to answer their questions! In recent decades, air pollution reduction policies have resulted in a large reduction in sulphur emissions and, to a lesser extent, in nitrogen emissions. However, the authors do not question the effect of these measures on soil acidification in their introduction. It is not clear whether the focus is on trends of soil acidity indicators or on the effects of forest health. 2) Insufficient description of the current state of knowledge: There are few references to recent studies related to the trends of the soil solution chemistry in response to declining acidic deposition. Yet many publications have been published in the last decade about the potential recovery of soil solution in forest soils and of surface waters in Europe and North America (in particular in countries participating in ICP-Forests and ICP-Waters) in response to declining acidic deposition. In addition, a major European study has been recently published (Johnsson et al. 2018, Global Change Biology, DOI: 10.1111/gcb.14156) on the response of soil solution chemistry in European forests. There was no mention of this study in the revised manuscript. Since the current state of the knowledge is insufficiently described, the introduction does not tell which knowledge gap this manuscript aims to fill. Also in the discussion, the results are not integrated in a larger context, not even at the national scale. There are few references to Swiss and European studies related to soil (solution) acidification. 3) Several concerns about the way of presenting results: 3a. I could not see a systematic way in presenting the data. The level of data aggregation for the different graphs and tables seems to be different, which makes the manuscript heterogeneous and difficult to understand (e.g. analysis of different depth intervals in figures). The tables are also difficult to read because units are not included. For instance, it would help the reader to know which year corresponds to the intercept and the units of intercept and changes (relative, absolute slope?) in the tables presenting the linear models. 3b. The topic of the manuscript is soil solution chemistry over the last 20 years, but I have not learnt much about the quality of the soil solution and how it has changed over time in the studied plots. A statistical summary of concentrations of individual cations and anions and the corresponding trends would have been useful. To present only the BC/Al ratio is insufficient to assess changes in soil solution chemistry. Knowing the behavior of sulphur, base cations and aluminum concentrations (or fluxes if available) is essential to better understand the effect of declining atmospheric deposition. The authors refer to a report illustrating time series at each plot. The link in the reference list is, however, not valid. After searching in Internet, I found this interesting report. The graphs show that the temporal trends differ between the plots and depths and, interestingly, that acidity indicators are stabilizing in the last years in some plots after a decrease in the first years of observation. 3c. Table 2: this analysis is not convincing. The authors mean in this graph that even a low percentile of measurements below the critical thresholds at a given plot would have a critical impact, which has not been reported in the literature. A more detailed analysis including information about the distribution of BC/Al values would be more informative. 3d. Figure 2: The calculation of BC/Al ratio at pH > 6.5 is misleading. The aluminum concentrations are very low, close to the detection limit and therefore cannot be quantified precisely. Very small differences in Al concentrations lead to large variations in BC/Al. In that respect, the quantification limit of Al should be reported to assess the uncertainty related to high BC/Al. In addition, inorganic Al was measured as difference before and after passing the samples through an ion exchanger and therefore uncertainties add up. Another tricky point in this figure is the comparison of soil and soil solution parameters using large depth intervals (<70 cm and >70 cm). The authors do not explain how BC/Al, BS and pH measurements were aggregated in this large depth interval. In this analysis, the presence of calcareous parent material in the subsoil might explain the discrepancies between BS (Fig. 2B) and soil pH (Fig. 2C) (see Blaser et al. 2008, https://doi.org/10.1002/jpln.200625213). Acidified forest soils on calcareous parent material in Switzerland usually have a strong base saturation gradient with depth. Also soil water regime (hydromorphy) and reduced drainage play an important role in the chemistry of these soils. 3e. Figure 3 is very interesting, because few studies have assessed Ca weathering rates and compare them to Ca leaching. However, information about temporal trends is missing. It is known from many studies that concentrations of base cations in soil solution have decreased in the last decade. The driver responsible for this decrease is not completely clear (chemical equilibrium due to declining sulphate concentrations in soil solution? declining atmospheric deposition of base cations? increase in root uptake? ). The temporal analysis of BC leaching from the soil is therefore also relevant because the rate of BC loss from the soil might have slowed down in the last decade, which is still a relevant information to assess the effect of air pollution reduction measures. 3f. Figure 5 is interesting. Fig. 5A shows that high BC/Al ratios at a given time are likely to decrease in the following years, while low BC/Al ratios are likely to stabilize or even increase. In lign 312, the authors write “The decreasing trends were getting weaker the stronger the soils are acidified”. I do not understand why the predicted values in 5B and 5C actually show the opposite trend. Other specific comments: • l. 17: remove “in Swiss forest soils”, not necessary • l.18. “remained stable at high level”: formulation is not clear • l. 20 “an increasing acidification”: not clear. An increasing acidification rate? Acidification is happening anyway. • l. 28-29: “Taken together, this study provides evidence of increasing soil acidification in Swiss forest stands.” This is not clear. Do the author mean that the rates of acidification are increasing? Fig. 5A illustrates a more balanced view. • l.31: “climate change”: meteorological parameters were used in the analysis. Climate change was not analysed. • l.45-48: The link between the exceedance of critical loads for acidity and the decreasing BC/Al ratio in Pannatier et al. (2011) is not clear. Declining BC/Al does not mean that critical loads are exceeded. • L.51: “is of crucial importance”: why? • L. 132-133: suction cups? at which depth? Basic information on the type of suction cups used in this study and sampled depths should be available in this section. • L. 159: what are the vegetation parameters? • L. 211: reference in prep is not suitable • L. 289: Reference to buffer ranges is missing • L. 318, l. 470: not comma before that. Remove everywhere • L. 401: “The results are confirmed by findings of the long-term forest monitoring of ICP Forests in Switzerland ([66]).” This sentence is not correct since ref 66 is much older. • L. 445-447: “Based on our results we question the reliability of the N concentration of the leaves as an indicator for eutrophication, since our measurements show that in beech leaves today they are no longer correlated with N deposition, which was the case in the 1980s”. Not shown by data from this manucript. • L. 476-L. 475. “Soil acidification has negative consequences for forest health (…). This conclusion is not supported by the findings of this manuscript. • L. 479: no analysis of climate change in this manuscript. Meteorological parameters were used. The manuscript did not show that the droughts were related to climate change. References are needed to make this link. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Robert Jandl Reviewer #3: No Reviewer #4: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 2 |
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Soil solution in Swiss forest stands: a 20 year's time series PONE-D-19-35297R2 Dear Dr. Braun, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Julian Aherne Academic Editor PLOS ONE Additional Editor Comments (optional): This is an important contribution. The authors have done an excellent job in addressing all reviewers’ concerns in the revised manuscript. I recommend that it is accepted for publication. Reviewers' comments: |
| Formally Accepted |
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PONE-D-19-35297R2 Soil solution in Swiss forest stands: a 20 year's time series Dear Dr. Braun: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Julian Aherne Academic Editor PLOS ONE |
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