Longitudinal changes in the nasopharyngeal resistome of South African infants using shotgun metagenomic sequencing

• Rendani I. Manenzhe ,

  Roles Data curation, Formal analysis, Investigation, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: manenzhe.r.i@gmail.com

  Affiliation Division of Medical Microbiology, Faculty of Health Science, University of Cape Town, Cape Town, South Africa

  http://orcid.org/0000-0003-1384-4336

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• Felix S. Dube,

  Roles Conceptualization, Data curation, Funding acquisition, Investigation, Methodology, Supervision, Writing – original draft, Writing – review & editing

  Affiliations Division of Medical Microbiology, Faculty of Health Science, University of Cape Town, Cape Town, South Africa, Department of Molecular and Cell Biology, Faculty of Science, University of Cape Town, Cape Town, South Africa

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• Meredith Wright,

  Roles Data curation, Formal analysis, Software, Validation, Visualization, Writing – review & editing

  Affiliation J. Craig Venter Institute, Rockville, MD, United States of America

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• Katie Lennard,

  Roles Data curation, Formal analysis, Software, Validation, Visualization, Writing – review & editing

  Affiliation Division of Computational Biology, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa

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• Heather J. Zar,

  Roles Conceptualization, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Writing – review & editing

  Affiliation Department of Paediatrics and Child Health, Red Cross War Memorial Children’s Hospital and MRC unit on Child & Adolescent Health, University of Cape Town, Cape Town, South Africa

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• Stephanie Mounaud,

  Roles Data curation, Formal analysis, Software, Validation, Visualization, Writing – review & editing

  Affiliation J. Craig Venter Institute, Rockville, MD, United States of America

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• William C. Nierman,

  Roles Conceptualization, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Writing – review & editing

  Affiliation J. Craig Venter Institute, Rockville, MD, United States of America

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• Mark P. Nicol,

  Roles Conceptualization, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Validation, Visualization, Writing – review & editing

  Affiliations Division of Medical Microbiology, Faculty of Health Science, University of Cape Town, Cape Town, South Africa, Division of Infection and Immunity, University of Western Australia, Perth, Australia

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• Clinton Moodley

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Resources, Supervision, Validation, Visualization, Writing – review & editing

  Affiliations Division of Medical Microbiology, Faculty of Health Science, University of Cape Town, Cape Town, South Africa, National Health Laboratory Service, Groote Schuur Hospital, Cape Town, South Africa

  http://orcid.org/0000-0001-7547-9026

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