Integrated Analysis of Whole Genome and Transcriptome Sequencing Reveals Diverse Transcriptomic Aberrations Driven by Somatic Genomic Changes in Liver Cancers

• Yuichi Shiraishi,

  Affiliation Laboratory of DNA Information Analysis, Human Genome Center, The Institute of Medical Science, The University of Tokyo, Tokyo, 108-8639, Japan

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• Akihiro Fujimoto,

  Affiliations Laboratory for Genome Sequencing Analysis, RIEKN Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan, Laboratory for Medical Science Mathematics, RIEKN Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan

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• Mayuko Furuta,

  Affiliation Laboratory for Genome Sequencing Analysis, RIEKN Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan

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• Hiroko Tanaka,

  Affiliation Laboratory of Sequence Analysis, Human Genome Center, The Institute of Medical Science, The University of Tokyo, Tokyo, 108-8639, Japan

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• Ken-ichi Chiba,

  Affiliation Laboratory of DNA Information Analysis, Human Genome Center, The Institute of Medical Science, The University of Tokyo, Tokyo, 108-8639, Japan

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• Keith A. Boroevich,

  Affiliation Laboratory for Medical Science Mathematics, RIEKN Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan

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• Tetsuo Abe,

  Affiliation Laboratory for Medical Science Mathematics, RIEKN Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan

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• Yoshiiku Kawakami,

  Affiliation Department of Medicine & Molecular Science, Hiroshima University School of Medicine, Hiroshima, 734-8551, Japan

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• Masaki Ueno,

  Affiliation Second Department of Surgery, Wakayama Medical University, Wakayama, 641-8510, Japan

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• Kunihito Gotoh,

  Affiliation Department of Surgery, Osaka Medical Center for Cancer and Cardiovascular Diseases, Osaka, 537-8511, Japan

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• Shun-ichi Ariizumi,

  Affiliation Department of Surgery, Institute of Gastroenterology, Tokyo Women's Medical University, Tokyo, 162-8666, Japan

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• Tetsuo Shibuya,

  Affiliation Laboratory of Sequence Analysis, Human Genome Center, The Institute of Medical Science, The University of Tokyo, Tokyo, 108-8639, Japan

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• Kaoru Nakano,

  Affiliation Laboratory for Genome Sequencing Analysis, RIEKN Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan

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• Aya Sasaki,

  Affiliation Laboratory for Genome Sequencing Analysis, RIEKN Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan

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• Kazuhiro Maejima,

  Affiliation Laboratory for Genome Sequencing Analysis, RIEKN Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan

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• Rina Kitada,

  Affiliation Laboratory for Genome Sequencing Analysis, RIEKN Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan

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• Shinya Hayami,

  Affiliation Second Department of Surgery, Wakayama Medical University, Wakayama, 641-8510, Japan

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• Yoshinobu Shigekawa,

  Affiliation Second Department of Surgery, Wakayama Medical University, Wakayama, 641-8510, Japan

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• Shigeru Marubashi,

  Affiliation Department of Surgery, Osaka Medical Center for Cancer and Cardiovascular Diseases, Osaka, 537-8511, Japan

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• Terumasa Yamada,

  Affiliation Department of Surgery, Osaka Medical Center for Cancer and Cardiovascular Diseases, Osaka, 537-8511, Japan

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• Michiaki Kubo,

  Affiliation Laboratory for Genotyping Development, RIEKN Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan

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• Osamu Ishikawa,

  Affiliation Department of Surgery, Osaka Medical Center for Cancer and Cardiovascular Diseases, Osaka, 537-8511, Japan

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• Hiroshi Aikata,

  Affiliation Department of Medicine & Molecular Science, Hiroshima University School of Medicine, Hiroshima, 734-8551, Japan

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• Koji Arihiro,

  Affiliation Department of Anatomical Pathology, Hiroshima University School of Medicine, Hiroshima, 734-8551, Japan

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• Hideki Ohdan,

  Affiliation Department of Gastroenterological Surgery, Hiroshima University School of Medicine, Hiroshima, 734-8551, Japan

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• Masakazu Yamamoto,

  Affiliation Department of Surgery, Institute of Gastroenterology, Tokyo Women's Medical University, Tokyo, 162-8666, Japan

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• Hiroki Yamaue,

  Affiliation Second Department of Surgery, Wakayama Medical University, Wakayama, 641-8510, Japan

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• Kazuaki Chayama,

  Affiliation Department of Medicine & Molecular Science, Hiroshima University School of Medicine, Hiroshima, 734-8551, Japan

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• Tatsuhiko Tsunoda,

  Affiliation Laboratory for Medical Science Mathematics, RIEKN Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan

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• Satoru Miyano,

  Affiliations Laboratory of DNA Information Analysis, Human Genome Center, The Institute of Medical Science, The University of Tokyo, Tokyo, 108-8639, Japan, Laboratory of Sequence Analysis, Human Genome Center, The Institute of Medical Science, The University of Tokyo, Tokyo, 108-8639, Japan

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•  [ ... ],
• Hidewaki Nakagawa

  * E-mail: hidewaki@ims.u-tokyo.ac.jp

  Affiliation Laboratory for Genome Sequencing Analysis, RIEKN Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan

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