Peer Review History
| Original SubmissionSeptember 16, 2024 |
|---|
|
PNTD-D-24-01331 LeishTec Ⓡ vaccination disrupts vertical transmission of Leishmania infantum PLOS Neglected Tropical Diseases Dear Dr. Valadares, Thank you for submitting your manuscript to PLOS Neglected Tropical Diseases. After careful consideration, we feel that it has merit but does not fully meet PLOS Neglected Tropical Diseases's publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript within 60 days Feb 04 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosntds@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pntd/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript: * A rebuttal letter that responds to each point raised by the editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'. This file does not need to include responses to any formatting updates and technical items listed in the 'Journal Requirements' section below. * A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'. * An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'. If you would like to make changes to your financial disclosure, competing interests statement, or data availability statement, please make these updates within the submission form at the time of resubmission. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. We look forward to receiving your revised manuscript. Kind regards, Deborah Bittencourt Mothé Fraga, Ph.D. Guest Editor PLOS Neglected Tropical Diseases Guilherme Werneck Section Editor PLOS Neglected Tropical Diseases Shaden Kamhawi co-Editor-in-Chief PLOS Neglected Tropical Diseases orcid.org/0000-0003-4304-636XX Paul Brindley co-Editor-in-Chief PLOS Neglected Tropical Diseases orcid.org/0000-0003-1765-0002 Additional Editor Comments: The study is highly significant as it investigates the use of a Leishmania vaccine in preventing the vertical transmission of L. infantum from infected mothers to their offspring. Based on my evaluation of the manuscript, I believe it requires major revisions before it can be accepted for publication. Despite differing opinions among the reviewers (one recommending rejection, another suggesting major revisions, and a third suggesting minor revisions), I believe that undertaking major revisions is essential to improve the manuscript and make it suitable for publication. As Reviewer 2 pointed out, PCR was performed on blood samples, which are not the most sensitive samples for this purpose. The authors should justify this choice and consider using more appropriate samples, such as bone marrow or spleen tissue. Additionally, it would be valuable to include an analysis of laboratory parameters, such as total protein and its fractions, creatinine levels, urinalysis, and UPC (urine protein-to-creatinine ratio). As Reviewer 3 recommended, the manuscript should include an immunological analysis to explain how the vaccine blocks transmission to the puppies. Is this achieved through a humoral immune response, a cellular immune response, or both? A semi-quantitative immunological assessment of both the dams and the puppies should be conducted to address this question. Journal Requirements: 1) Please ensure that the CRediT author contributions listed for every co-author are completed accurately and in full. At this stage, the following Authors/Authors require contributions: Diogo G Valadares, Erick Kontowicz, Serena Tang, Angela Toepp, Adam Lima, Mandy Larsen, Tara Grinnage-Pulley, and Jacob Oleson. Please ensure that the full contributions of each author are acknowledged in the "Add/Edit/Remove Authors" section of our submission form. The list of CRediT author contributions may be found here: https://journals.plos.org/plosntds/s/authorship#loc-author-contributions 2) We ask that a manuscript source file is provided at Revision. Please upload your manuscript file as a .doc, .docx, .rtf or .tex. If you are providing a .tex file, please upload it under the item type u2018LaTeX Source Fileu2019 and leave your .pdf version as the item type u2018Manuscriptu2019. 3) Please provide an Author Summary. This should appear in your manuscript between the Abstract (if applicable) and the Introduction, and should be 150-200 words long. The aim should be to make your findings accessible to a wide audience that includes both scientists and non-scientists. Sample summaries can be found on our website under Submission Guidelines: https://journals.plos.org/plosntds/s/submission-guidelines#loc-parts-of-a-submission 4) We do not publish any copyright or trademark symbols that usually accompany proprietary names, eg ©, ®, or TM (e.g. next to drug or reagent names). Therefore please remove all instances of trademark/copyright symbols throughout the text, including: - ® on: Title, and pages 5, 7, 9, and 14. 5) Your manuscript is missing the following sections: Discussion. Please ensure all required sections are present and in the correct order. Make sure section heading levels are clearly indicated in the manuscript text, and limit sub-sections to 3 heading levels. An outline of the required sections can be consulted in our submission guidelines here: https://journals.plos.org/plosntds/s/submission-guidelines#loc-parts-of-a-submission 6) Please upload all main figures as separate Figure files in .tif or .eps format. For more information about how to convert and format your figure files please see our guidelines: https://journals.plos.org/plosntds/s/figures 7) We note that your Data Availability Statement is currently as follows: "The data supporting the findings of this study are available upon request through the REDCap data management platform. REDCap (Research Electronic Data Capture) is a secure, web-based application designed to support data capture for research studies, providing validated and auditable data collection. Access to the data is restricted to ensure patient confidentiality and adherence to ethical guidelines.Researchers interested in accessing the dataset may contact the corresponding author to request access. To ensure proper data use, prospective users will be required to submit a brief description of their intended research use, agree to a data use agreement (DUA), and obtain necessary institutional approvals, such as Institutional Review Board (IRB) approval, if applicable.All data will be provided in a de-identified format to protect participant privacy. Specific variables and any associated metadata will be made available to qualified researchers following approval.". Please confirm at this time whether or not your submission contains all raw data required to replicate the results of your study. Authors must share the “minimal data set” for their submission. PLOS defines the minimal data set to consist of the data required to replicate all study findings reported in the article, as well as related metadata and methods (https://journals.plos.org/plosone/s/data-availability#loc-minimal-data-set-definition). For example, authors should submit the following data: - The values behind the means, standard deviations and other measures reported; - The values used to build graphs; - The points extracted from images for analysis.. Authors do not need to submit their entire data set if only a portion of the data was used in the reported study. If your submission does not contain these data, please either upload them as Supporting Information files or deposit them to a stable, public repository and provide us with the relevant URLs, DOIs, or accession numbers. For a list of recommended repositories, please see https://journals.plos.org/plosone/s/recommended-repositories. If there are ethical or legal restrictions on sharing a de-identified data set, please explain them in detail (e.g., data contain potentially sensitive information, data are owned by a third-party organization, etc.) and who has imposed them (e.g., an ethics committee). Please also provide contact information for a data access committee, ethics committee, or other institutional body to which data requests may be sent. If data are owned by a third party, please indicate how others may request data access. 8) Please amend your detailed Financial Disclosure statement. This is published with the article. It must therefore be completed in full sentences and contain the exact wording you wish to be published. Please ensure that the funders and grant numbers match between the Financial Disclosure field and the Funding Information tab in your submission form. Note that the funders must be provided in the same order in both places as well. State the initials, alongside each funding source, of each author to receive each grant. For example: "This work was supported by the National Institutes of Health (####### to AM; ###### to CJ) and the National Science Foundation (###### to AM)." State what role the funders took in the study. If the funders had no role in your study, please state: "The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.". If you did not receive any funding for this study, please simply state: u201cThe authors received no specific funding for this work.u201d Reviewers' Comments: Reviewer's Responses to Questions Key Review Criteria Required for Acceptance? As you describe the new analyses required for acceptance, please consider the following: Methods -Are the objectives of the study clearly articulated with a clear testable hypothesis stated? -Is the study design appropriate to address the stated objectives? -Is the population clearly described and appropriate for the hypothesis being tested? -Is the sample size sufficient to ensure adequate power to address the hypothesis being tested? -Were correct statistical analysis used to support conclusions? -Are there concerns about ethical or regulatory requirements being met? Reviewer #1: -Are the objectives of the study clearly articulated with a clear testable hypothesis stated? Yes -Is the study design appropriate to address the stated objectives? Yes -Is the population clearly described and appropriate for the hypothesis being tested? Yes -Is the sample size sufficient to ensure adequate power to address the hypothesis being tested? No, but the authors acknowledge and address the sample size limitation. -Were correct statistical analysis used to support conclusions? Yes -Are there concerns about ethical or regulatory requirements being met? Yes Reviewer #2: The objectives of the study is clearly articulated with a clear testable hypothesis stated but the study design is not appropriate for the hypothesis tested, as PCR was performed on a blood sample. This biological sample is not very sensitive for evaluating infection. It would be necessary to use a bone marrow or spleen sample. Furthermore, it would be important to analyze the laboratory dosages of total protein and fractions, creatine, urinalysis and UPC. Analyzing clinical signs alone is not sufficient to determine the presence of canine Leishmaniasis. Scientific studies demonstrate that there are patients without evident clinical signs with subclinical disease and moderate to high parasite load in the spleen and bone marrow. The population clearly described and appropriate for the hypothesis being tested? Yes. Is the sample size sufficient to ensure adequate power to address the hypothesis being tested? Yes. Were correct statistical analysis used to support conclusions? Needs to be reviewed. Are there concerns about ethical or regulatory requirements being met? Yes, there are. Reviewer #3: -Are the objectives of the study clearly articulated with a clear testable hypothesis stated? Yes. -Is the study design appropriate to address the stated objectives? No, the number of dams were not sufficient for a strong and comprehensive statistical analysis -Is the population clearly described and appropriate for the hypothesis being tested? No, this is the major problem of the manuscript. -Were correct statistical analysis used to support conclusions? Yes. However, with a limited force. -Are there concerns about ethical or regulatory requirements being met? Yes ********** Results -Does the analysis presented match the analysis plan? -Are the results clearly and completely presented? -Are the figures (Tables, Images) of sufficient quality for clarity? Reviewer #1: -Does the analysis presented match the analysis plan? Yes -Are the results clearly and completely presented? Yes -Are the figures (Tables, Images) of sufficient quality for clarity? Yes Reviewer #2: Does the analysis presented match the analysis plan? yes. Are the results clearly and completely presented? No, needs to be reviewed. Are the figures (Tables, Images) of sufficient quality for clarity? The flowchar and demographic data is well designed and clearly defines the analysis and losses between the groups. The graphs on clinical signs could be better detailed regarding the intensity of each clinical sign and which signs were most prevalent.The graphs on antibody quantification do not define the cutoff point nor does it define which symbol represents the offspring of each group. The survival curve of the dams shows that unvaccinated bitches had a longer survival rate. This information needs to be discussed at work. Reviewer #3: -Does the analysis presented match the analysis plan? No, due to the limited number of dams included in the study. -Are the results clearly and completely presented? No, several aspects of the results should be more addressed in the results, such as the humoral response. -Are the figures (Tables, Images) of sufficient quality for clarity? Yes ********** Conclusions -Are the conclusions supported by the data presented? -Are the limitations of analysis clearly described? -Do the authors discuss how these data can be helpful to advance our understanding of the topic under study? -Is public health relevance addressed? Reviewer #1: -Are the conclusions supported by the data presented? Yes -Are the limitations of analysis clearly described? Yes -Do the authors discuss how these data can be helpful to advance our understanding of the topic under study? Yes -Is public health relevance addressed? Yes Reviewer #2: Are the conclusions supported by the data presented? No. Are the limitations of analysis clearly described? Yes.The results do not adequately assess the presence of infection or disease. Spleen or bone marrow PCR should have been used to quantify the parasite load. Total proteins and fractions, urinalysis and UPC should have been measured, among other biochemical analyzes that could evaluate canine leishmaniasis. The authors conclude that the vaccination of dams allowed uninfected puppies, but they did not perform PCR on biological samples with a sufficient degree of sensitivity to define the parasite load. The objective of the study is valid and its design is well defined, but the diagnostic tools were not adequate. It is a risk to public health, suggested that vaccination was able to block vertical transmission based on the results obtained in this work. I suggest that the authors look into the possibility of collecting spleen or bone marrow samples for evaluation of these patients. And biochemical tests for analysis and staging of canine leishmaniasis according to the guide line by Solano-Gallego et al. The discussion about the survival curve of dams should also be carried out. Reviewer #3: -Are the conclusions supported by the data presented? No, due to the insufficient number of dams included in the study. -Are the limitations of analysis clearly described? Yes. -Do the authors discuss how these data can be helpful to advance our understanding of the topic under study? YEs, but with a limited emphasis. -Is public health relevance addressed? Yes, but with a limited emphasis. ********** Editorial and Data Presentation Modifications? Use this section for editorial suggestions as well as relatively minor modifications of existing data that would enhance clarity. If the only modifications needed are minor and/or editorial, you may wish to recommend “Minor Revision” or “Accept”. Reviewer #1: Thank you for the opportunity to review. This paper details a study investigating whether vaccination of dams provides some protection against leishmaniosis in their offspring. The results are very interesting and promising, although the authors appropriately note the limitations of their sample size. The study seems well designed, and the paper is well-written overall. However, I think some minor revisions are necessary. Reviewer #2: This article needs Major revision with modifications to its initial hypotheses or new tests on study patients. Reviewer #3: (No Response) ********** Summary and General Comments Use this section to provide overall comments, discuss strengths/weaknesses of the study, novelty, significance, general execution and scholarship. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. If requesting major revision, please articulate the new experiments that are needed. Reviewer #1: Thank you for the opportunity to review. This paper details a study investigating whether vaccination of dams provides some protection against leishmaniosis in their offspring. The results are very interesting and promising, although the authors appropriately note the limitations of their sample size. The study seems well designed, and the paper is well-written overall. However, I think some minor revisions are necessary, and did have a couple of clarifying questions for the author’s consideration: - How were the dogs kept/housed? They are described as being recruited from hunting dog kennels in the Midwestern US. These were not research-purpose dogs? Noting that transmission via sand flies is not thought to occur in the U.S., but horizontal transmission is still possible – so wondering whether there were differences in how the dogs were housed/kept between the experimental and control groups that could have affected the outcome (e.g., were they housed singly, or in groups, etc.). - Please provide the sensitivities and specificities of the diagnostic tests used. - In the “results and conclusions” section, third paragraph, where the one dog born to a vaccinated dam and who had a transient positive kqPCR result is being discussed, there is this in the middle of the sentence: “(AGE?)”. I’m not sure what this means but think it would be important to know the age at which the dog’s positive result occurred. Other edits: - While the final manuscript will almost certainly undergo proofreading at the journal, I would encourage the authors to also do that before they submit their revision. For example, there are a couple of instances in the “results and conclusions” section where the word “dams” was misspelled. Additionally, the last sentence in the 6th paragraph in the “results and conclusions” section is a little garbled and could use some restructuring for clarity: “Our study also unveil the possibly a benefit of vaccinating all at risk animals…” - Reference #15 and #19 are the same. - Reference #20 and #27 also appear to be the same. - Reference #4 and #26 are the same. - Reference #28 and #22 are the same. Reviewer #2: The idea of the article is excellent, but insensitive tools were used to test it. I hope that it will be possible to collect patient samples to perform PCR and staging of canine leishmaniasis. It is necessary to use articles from the Leishvet group as scientific references. Reviewer #3: This is an interesting study that shows the influence of vaccination in the transmission of Leishmania from infected dams to their puppies. However, several points of this study should be considered. - The number of dams included in the study is very limited. In this way, several statistical analyses lack force and are not so strong. the results are very preliminary, and makes this manuscript more suitable as a short communication. - Authors do not show what is important for the blockage of transmission for the puppies. Would it be the humoral response? the cellular immune response? A semi-quantitative analysis of the dams and the puppies would be interesting to aid to solve this problem. - Additionally, it would bel also interesting a basic assay on the specific-production of IFN gamma by the dams and by the puppies, to sse if there is any correlation between the IFN gamma levels and the blockage of transmission. - The manuscript could be send to a English grammar and structure revision service, since several parts of the manuscript are particularly difficult to understand. ********** PLOS authors have the option to publish the peer review history of their article (what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy . Reviewer #1: No Reviewer #2: No Reviewer #3: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] Figure resubmission: While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. If there are other versions of figure files still present in your submission file inventory at resubmission, please replace them with the PACE-processed versions. Reproducibility: To enhance the reproducibility of your results, we recommend that authors of applicable studies deposit laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. Additionally, PLOS ONE offers an option to publish peer-reviewed clinical study protocols. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols |
| Revision 1 |
|
Dear Dr Valadares, We are pleased to inform you that your manuscript 'LeishTec vaccination disrupts vertical transmission of Leishmania infantum' has been provisionally accepted for publication in PLOS Neglected Tropical Diseases. Before your manuscript can be formally accepted you will need to complete some formatting changes, which you will receive in a follow up email. A member of our team will be in touch with a set of requests. Please note that your manuscript will not be scheduled for publication until you have made the required changes, so a swift response is appreciated. IMPORTANT: The editorial review process is now complete. PLOS will only permit corrections to spelling, formatting or significant scientific errors from this point onwards. Requests for major changes, or any which affect the scientific understanding of your work, will cause delays to the publication date of your manuscript. Should you, your institution's press office or the journal office choose to press release your paper, you will automatically be opted out of early publication. We ask that you notify us now if you or your institution is planning to press release the article. All press must be co-ordinated with PLOS. Thank you again for supporting Open Access publishing; we are looking forward to publishing your work in PLOS Neglected Tropical Diseases. Best regards, Deborah Bittencourt Mothé Fraga, Ph.D. Guest Editor PLOS Neglected Tropical Diseases Guilherme Werneck Section Editor PLOS Neglected Tropical Diseases Shaden Kamhawi co-Editor-in-Chief PLOS Neglected Tropical Diseases orcid.org/0000-0003-4304-636XX Paul Brindley co-Editor-in-Chief PLOS Neglected Tropical Diseases orcid.org/0000-0003-1765-0002 *********************************************************** |
| Formally Accepted |
|
Dear Dr Valadares, We are delighted to inform you that your manuscript, "LeishTec vaccination disrupts vertical transmission of Leishmania infantum," has been formally accepted for publication in PLOS Neglected Tropical Diseases. We have now passed your article onto the PLOS Production Department who will complete the rest of the publication process. All authors will receive a confirmation email upon publication. The corresponding author will soon be receiving a typeset proof for review, to ensure errors have not been introduced during production. Please review the PDF proof of your manuscript carefully, as this is the last chance to correct any scientific or type-setting errors. Please note that major changes, or those which affect the scientific understanding of the work, will likely cause delays to the publication date of your manuscript. Note: Proofs for Front Matter articles (Editorial, Viewpoint, Symposium, Review, etc...) are generated on a different schedule and may not be made available as quickly. Soon after your final files are uploaded, the early version of your manuscript will be published online unless you opted out of this process. The date of the early version will be your article's publication date. The final article will be published to the same URL, and all versions of the paper will be accessible to readers. You will receive an invoice from PLOS for your publication fee after your manuscript has reached the completed accept phase. If you receive an email requesting payment before acceptance or for any other service, this may be a phishing scheme. Learn how to identify phishing emails and protect your accounts at https://explore.plos.org/phishing. Thank you again for supporting open-access publishing; we are looking forward to publishing your work in PLOS Neglected Tropical Diseases. Best regards, Shaden Kamhawi co-Editor-in-Chief PLOS Neglected Tropical Diseases Paul Brindley co-Editor-in-Chief PLOS Neglected Tropical Diseases |
Open letter on the publication of peer review reports
PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.
We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.
Learn more at ASAPbio .