Peer Review History
| Original SubmissionSeptember 7, 2024 |
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PNTD-D-24-01289 Functional Identification of Annexin B1 and Annexin B2 from Cysticercus cellulosae and Their Mechanism in Plasma Membrane Repair PLOS Neglected Tropical Diseases Dear Dr. Sun, Thank you for submitting your manuscript to PLOS Neglected Tropical Diseases. After careful consideration, we feel that it has merit but does not fully meet PLOS Neglected Tropical Diseases's publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript within 60 days Apr 17 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosntds@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pntd/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript: * A rebuttal letter that responds to each point raised by the editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'. This file does not need to include responses to any formatting updates and technical items listed in the 'Journal Requirements' section below. * A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'. * An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'. If you would like to make changes to your financial disclosure, competing interests statement, or data availability statement, please make these updates within the submission form at the time of resubmission. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. We look forward to receiving your revised manuscript. Kind regards, Richard A. Bowen, DVM PhD Academic Editor PLOS Neglected Tropical Diseases Jong-Yil Chai Section Editor PLOS Neglected Tropical Diseases Shaden Kamhawi co-Editor-in-Chief PLOS Neglected Tropical Diseases orcid.org/0000-0003-4304-636XX Paul Brindley co-Editor-in-Chief PLOS Neglected Tropical Diseases orcid.org/0000-0003-1765-0002 Additional Editor Comments : Your manuscript has finally been evaluated by three - apologies for how low it took to get the reviews back. All three reviewers had some major criticisms. Pleease review their comments and prepare a revised version of the manuscript as detailed in this letter and also prepare a responses to reviewer document that outlines you change and reasoning behind the changes or defend not changing certain aspects of the paper. Journal Requirements: 1) Please ensure that the CRediT author contributions listed for every co-author are completed accurately and in full. At this stage, the following Authors/Authors require contributions: Peixia He, Dejia Zhang, Mengqi Wang, Rui Duan, Yuyuan Zhao, Sirui Wang, Xing Yang, Xiaolei Liu, and Shumin Sun. Please ensure that the full contributions of each author are acknowledged in the "Add/Edit/Remove Authors" section of our submission form. The list of CRediT author contributions may be found here: https://journals.plos.org/plosntds/s/authorship#loc-author-contributions 2) Please upload all main figures as separate Figure files in .tif or .eps format. For more information about how to convert and format your figure files please see our guidelines: https://journals.plos.org/plosntds/s/figures 3) We have noticed that you have uploaded Supporting Information files, but you have not included a list of legends. Please add a full list of legends for your Supporting Information files after the references list. 4) We note that your Data Availability Statement is currently as follows: "All data generated or analyzed during this study are included in this published article." Please confirm at this time whether or not your submission contains all raw data required to replicate the results of your study. Authors must share the “minimal data set” for their submission. PLOS defines the minimal data set to consist of the data required to replicate all study findings reported in the article, as well as related metadata and methods (https://journals.plos.org/plosone/s/data-availability#loc-minimal-data-set-definition). For example, authors should submit the following data: 1) The values behind the means, standard deviations and other measures reported; 2) The values used to build graphs; 3) The points extracted from images for analysis.. Authors do not need to submit their entire data set if only a portion of the data was used in the reported study. If your submission does not contain these data, please either upload them as Supporting Information files or deposit them to a stable, public repository and provide us with the relevant URLs, DOIs, or accession numbers. For a list of recommended repositories, please see https://journals.plos.org/plosone/s/recommended-repositories. If there are ethical or legal restrictions on sharing a de-identified data set, please explain them in detail (e.g., data contain potentially sensitive information, data are owned by a third-party organization, etc.) and who has imposed them (e.g., an ethics committee). Please also provide contact information for a data access committee, ethics committee, or other institutional body to which data requests may be sent. If data are owned by a third party, please indicate how others may request data access. 5) Please ensure that the funders and grant numbers match between the Financial Disclosure field and the Funding Information tab in your submission form. Note that the funders must be provided in the same order in both places as well. Currently, the order of the grants is different in both places. Comments to the Authors: Please note that one of the reviews is uploaded as an attachment. Reviewers' Comments: Reviewer's Responses to Questions Key Review Criteria Required for Acceptance? As you describe the new analyses required for acceptance, please consider the following: Methods -Are the objectives of the study clearly articulated with a clear testable hypothesis stated? -Is the study design appropriate to address the stated objectives? -Is the population clearly described and appropriate for the hypothesis being tested? -Is the sample size sufficient to ensure adequate power to address the hypothesis being tested? -Were correct statistical analysis used to support conclusions? -Are there concerns about ethical or regulatory requirements being met? Reviewer #1: Yes, the objectives of the study clearly articulated with a clear testable hypothesis stated. Yes, the study design appropriate to address the stated objectives. Yes, the sample size is sufficient. Yes, correct statistical analysis is used to support conclusions. Reviewer #2: Line 158 Expression of Annexin B1 and Annexin B2 Plese provide genes' IDs or sequence used Reviewer #3: (No Response) ********** Results -Does the analysis presented match the analysis plan? -Are the results clearly and completely presented? -Are the figures (Tables, Images) of sufficient quality for clarity? Reviewer #1: Yes, the analysis presented match the analysis plan. Yes, the results clearly and completely presented. Yes, the figures are of sufficent quality for clarity. Reviewer #2: Figure 4, no scale bar. Figure 5, provide raw data and details on statistical analysis. There are only two levels of significance either ns or P<0.0001 (****) that seems possible although improbable. Figure 8. Repair of plasma membrane after transfection. Should be Repair after the injury. Figure 9. Fluorescence intensity quantization of FM1-43 in cells. Example of real time imaging of cell membrane repair in response to laser injury from “[29] Sønder SL, Ebstrup ML, Dias C, Heitmann ASB, Nylandsted J. Plasma Membrane 658 Wounding and Repair Assays for Eukaryotic Cells. Bio Protoc. 2022;12(11):e4437. 659 doi:10.21769/BioProtoc.4437” has two-fold difference in F/F0 in control cells with and without Ca2+ because of the divalent-membrane interaction itself. Authors may want to discuss why there is no Ca2+ effect in control cells in their control experiment. FM1-43 kinetics supposed to show saturation upon membrane repair. Authors can discuss why they see near linear dye accumulation. Methods section was going to use (AUC) analysis followed by unpaired t-test with Welch’s that appears missing from Figure 9. Reviewer #3: (No Response) ********** Conclusions -Are the conclusions supported by the data presented? -Are the limitations of analysis clearly described? -Do the authors discuss how these data can be helpful to advance our understanding of the topic under study? -Is public health relevance addressed? Reviewer #1: Yes, the conclusions are supported by the data presented. Yes, the limitations of analysis clearly described. Yes, the authors discuss how these data can be helpful to advance our understanding of the topic under study. Yes, the public health relevance is addressed. Reviewer #2: Conclusions are supported by the data presented Reviewer #3: (No Response) ********** Editorial and Data Presentation Modifications? Use this section for editorial suggestions as well as relatively minor modifications of existing data that would enhance clarity. If the only modifications needed are minor and/or editorial, you may wish to recommend “Minor Revision” or “Accept”. Reviewer #1: English writing is not fluent, requring major revision. Reviewer #2: Authors may want to extend and clarify figures captions. Reviewer #3: (No Response) ********** Summary and General Comments Use this section to provide overall comments, discuss strengths/weaknesses of the study, novelty, significance, general execution and scholarship. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. If requesting major revision, please articulate the new experiments that are needed. Reviewer #1: This manuscript described the investigation on the functions of Annexin B1 and B2 from Cysticercus cellulosae, the larval stage of parasitic tape worm Taenia solium. This parasite can cause severe human disease by invading human brain, retina and heart. However, the invading mechanism is still unclear. Annexins are evolutionarily highly conserved, calcium-dependent phospholipid-binding proteins. In spite that previous studies have reported that annexins have various functions, including anti-inflammatory properties, maintaining fibrinolytic balance, anticoagulant, regulating vesicle transport, and controlling the formation of ion channels, little is known about the annexins from C. cellulosae. The present study investigated the localization of these two proteins in the worm, assessed their anticoagulant function, phospholipid binding activity and membrane repair function. The results revealed that the two proteins were located on the surface of the body and the surface of the internal digestive gland. Both proteins would prolong the time of the endogenous and exogenous coagulation pathways and both have a preference for binding to PS rather than PC. C2C12 cells transfected with the B1 and B2 genes took less time to repair the plasma membrane after laser-induced damage. The findings from this study added our knowledge about the functions of these two protein, which helped us to further understand the invasion mechanism of C. cellulosae. The aim of this study is clearly formulated in the introduction, the methods selected are appropriate and the results are reasonably presented. However, the English writing is not fluent, requiring substantial revision. Some minor errors are listed as example: Line 26, “coli” should be italic. Line 160: “Escherichia coli” should be read as italic. Line 179: “B” should be lower case. Figures 3 and 4 can be combined into one figure. Line 428, “+Ca2+ no repair group of Annexin B2.”, is this sentence correct? Reviewer #2: Ms addresses important parasitic disease caused by Cysticercus cellulosae. Authors expressed and purified Annexins B1 and B2 in prokaryotic vector and synthesized antibodies. The technical achievement allowed to them to localize Annexins at the surface of the parasite as expected. Anticoagulant activity of the Annexin was measured and found to be extremely significant (P<0.0001) for some protein concentrations. The statistical test performed for the anticoagulant activity’s measurement requires additional transparency and possible reevaluation. Another discrepancy is a lack of Ca2+ effect on the cell membrane repair in control cells and lack of saturation of the FM1-43 dye implies lack of membrane repair but rather continuous dye uptake by the damaged cells. The new experiment author may want to consider is to replicate the FM1-43 dye protocol in control conditions or discuss the observed discrepancies. Authors may discuss more Annexins as a drug target. Possible drugs classes targeting them, interaction with host proteins etc. Reviewer #3: (No Response) ********** PLOS authors have the option to publish the peer review history of their article (what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy . Reviewer #1: No Reviewer #2: No Reviewer #3: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] Figure resubmission: While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. If there are other versions of figure files still present in your submission file inventory at resubmission, please replace them with the PACE-processed versions. Reproducibility: To enhance the reproducibility of your results, we recommend that authors of applicable studies deposit laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. Additionally, PLOS ONE offers an option to publish peer-reviewed clinical study protocols. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols
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| Revision 1 |
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Dear Mr Sun, We are pleased to inform you that your manuscript 'Functional Identification of Annexin B1 and Annexin B2 from Cysticercus cellulosae and Their Mechanism in Plasma Membrane Repair' has been provisionally accepted for publication in PLOS Neglected Tropical Diseases. Before your manuscript can be formally accepted you will need to complete some formatting changes, which you will receive in a follow up email. A member of our team will be in touch with a set of requests. Please note that your manuscript will not be scheduled for publication until you have made the required changes, so a swift response is appreciated. IMPORTANT: The editorial review process is now complete. PLOS will only permit corrections to spelling, formatting or significant scientific errors from this point onwards. Requests for major changes, or any which affect the scientific understanding of your work, will cause delays to the publication date of your manuscript. Should you, your institution's press office or the journal office choose to press release your paper, you will automatically be opted out of early publication. We ask that you notify us now if you or your institution is planning to press release the article. All press must be co-ordinated with PLOS. Thank you again for supporting Open Access publishing; we are looking forward to publishing your work in PLOS Neglected Tropical Diseases. Best regards, Richard A. Bowen, DVM PhD Academic Editor PLOS Neglected Tropical Diseases Jong-Yil Chai Section Editor PLOS Neglected Tropical Diseases Shaden Kamhawi co-Editor-in-Chief PLOS Neglected Tropical Diseases orcid.org/0000-0003-4304-636XX Paul Brindley co-Editor-in-Chief PLOS Neglected Tropical Diseases orcid.org/0000-0003-1765-0002 *********************************************************** Thannk your for the comprehensive and thoughtful response to reviewer comments. This manuscript will be a valuable contribution to the field. |
| Formally Accepted |
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Dear Mr Sun, We are delighted to inform you that your manuscript, "Functional Identification of Annexin B1 and Annexin B2 from Cysticercus cellulosae and Their Mechanism in Plasma Membrane Repair," has been formally accepted for publication in PLOS Neglected Tropical Diseases. We have now passed your article onto the PLOS Production Department who will complete the rest of the publication process. All authors will receive a confirmation email upon publication. The corresponding author will soon be receiving a typeset proof for review, to ensure errors have not been introduced during production. Please review the PDF proof of your manuscript carefully, as this is the last chance to correct any scientific or type-setting errors. Please note that major changes, or those which affect the scientific understanding of the work, will likely cause delays to the publication date of your manuscript. Note: Proofs for Front Matter articles (Editorial, Viewpoint, Symposium, Review, etc...) are generated on a different schedule and may not be made available as quickly. Soon after your final files are uploaded, the early version of your manuscript will be published online unless you opted out of this process. The date of the early version will be your article's publication date. The final article will be published to the same URL, and all versions of the paper will be accessible to readers. Thank you again for supporting open-access publishing; we are looking forward to publishing your work in PLOS Neglected Tropical Diseases. Best regards, Shaden Kamhawi co-Editor-in-Chief PLOS Neglected Tropical Diseases Paul Brindley co-Editor-in-Chief PLOS Neglected Tropical Diseases |
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