Peer Review History
| Original SubmissionSeptember 9, 2024 |
|---|
|
Dear Dr Bryant, Thank you very much for submitting your manuscript "Thermosensory behaviors of the free-living life stages of Strongyloidesspecies support parasitism in tropical environments" for consideration at PLOS Neglected Tropical Diseases. As with all papers reviewed by the journal, your manuscript was reviewed by members of the editorial board and by several independent reviewers. The reviewers appreciated the attention to an important topic. Based on the reviews, we are likely to accept this manuscript for publication, providing that you modify the manuscript according to the review recommendations. Please prepare and submit your revised manuscript within 30 days. If you anticipate any delay, please let us know the expected resubmission date by replying to this email. When you are ready to resubmit, please upload the following: [1] A letter containing a detailed list of your responses to all review comments, and a description of the changes you have made in the manuscript. Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out [2] Two versions of the revised manuscript: one with either highlights or tracked changes denoting where the text has been changed; the other a clean version (uploaded as the manuscript file). Important additional instructions are given below your reviewer comments. Thank you again for your submission to our journal. We hope that our editorial process has been constructive so far, and we welcome your feedback at any time. Please don't hesitate to contact us if you have any questions or comments. Sincerely, Eduardo José Lopes-Torres, Ph.D. Academic Editor PLOS Neglected Tropical Diseases Jong-Yil Chai Section Editor PLOS Neglected Tropical Diseases *********************** Reviewer's Responses to Questions Key Review Criteria Required for Acceptance? As you describe the new analyses required for acceptance, please consider the following: Methods -Are the objectives of the study clearly articulated with a clear testable hypothesis stated? -Is the study design appropriate to address the stated objectives? -Is the population clearly described and appropriate for the hypothesis being tested? -Is the sample size sufficient to ensure adequate power to address the hypothesis being tested? -Were correct statistical analysis used to support conclusions? -Are there concerns about ethical or regulatory requirements being met? Reviewer #1: (No Response) Reviewer #2: All appropriate I have no specific comments here Reviewer #3: The objectives of the study are clearly articulated, the experimental design was appropriate. I am not aware of ethical concerns here. -------------------- Results -Does the analysis presented match the analysis plan? -Are the results clearly and completely presented? -Are the figures (Tables, Images) of sufficient quality for clarity? Reviewer #1: (No Response) Reviewer #2: Results are exceptionally clearly presented in an easily digestible form. Notably the presentation of the data in figure format is excellent. The use of figures to illustrate the concepts conveyed is also particularly helpful. Reviewer #3: The results are clearly presented and in line with the objectives of the study. The Figures are very nicely layed out. -------------------- Conclusions -Are the conclusions supported by the data presented? -Are the limitations of analysis clearly described? -Do the authors discuss how these data can be helpful to advance our understanding of the topic under study? -Is public health relevance addressed? Reviewer #1: (No Response) Reviewer #2: All supported fully by data and consider the future direction of the work adequately. Reviewer #3: The authors' conclusions are supported by the data. Public health relevance is addressed. -------------------- Editorial and Data Presentation Modifications? Use this section for editorial suggestions as well as relatively minor modifications of existing data that would enhance clarity. If the only modifications needed are minor and/or editorial, you may wish to recommend “Minor Revision” or “Accept”. Reviewer #1: (No Response) Reviewer #2: No issues Reviewer #3: I recommend accepting this manuscript with only minor changes: - a clarification/discussion of the existence of variable thermal preference among nematodes of the Caenorhabditis gender and even within C. elegans species. C. elegans was used as a 'non-parasitic' nematode control, which makes sense because it is the best studied nematode in term of thermosensory behavior. But it remains one particular case. Disscussing what's known a little more largely would be interesting (no new data needed). See below. -------------------- Summary and General Comments Use this section to provide overall comments, discuss strengths/weaknesses of the study, novelty, significance, general execution and scholarship. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. If requesting major revision, please articulate the new experiments that are needed. Reviewer #1: In this manuscript the authors compare the thermotactic behavior of the facultative free-living adults of two species of the nematode genus Strongyloides, which are small intestinal parasites and compare it with the corresponding behavior of the infective larvae of the same species and of adults of the non-parasitic model nematode C. elegans. The study is interesting and well done. The manuscript is very well written and easy to follow. The rational and the results are presented in a well-understandable form. Below, I list a number of points, I recommend the authors to address prior to acceptance of this manuscript. Only one of these points is major. Specific comments Major point: Although the authors do mention in the introduction that there are biological within species differences between different isolates, they interpret their results in this study always with respect to species. Given that for each species only one isolate (the respective laboratory isolate) was analyzed this results in an overinterpretation of the data. I do not think that it is clear if the differences observed between S. stercoralis and S. ratti are differences between species or between isolates. I am not asking for the inclusion of additional isolates but the authors should discuss more clearly that their data are valid for the particular isolates and that it is not known if similar differences might also exist between isolates of the same species. Minor points: Fig. 1E (similar in Fig. S2D): It is indicated that there are a few Strongyloides with negative thermotaxis but in Fig. 1BC no such examples are shown. Although the authors do mention that they show representative (and not all) tracks, this is a bit confusing. Line 289: At this place it is not clear if the temperatures tested are indeed noxious for Strongyloiodes. Line 291: Please comment if the S. stercoralis were still fully motile at 30°C. Lines 309,313: It is a bit confusing that in the text the gradient is described as 12-22°C but in Fig. S5 it is labelled as 13-23°C. Similar small inconsistencies occur also at other places, for example between Fig. S6A and its legend. Fig. S4 is not mentioned in the text Line 315: "Fig. S5D, F" (the 5 is missing). Fig 3B: I cannot really understand how to interpret the heatmap. Fig. 4: Is this figure really necessary? Lines 619,620 (legend to Fig. 5): Please indicate here how many worms per experiment. Lines 675,676: Mention that autoinfection is specific for S. stercoralis and does not occur in S. ratti. Reviewer #2: Gregory and colleagues present an elegant study of the thermal preferences and of Strongyloides free-living adult nematodes in comparison to the well-studied preferences of C. elegans. This work builds upon previous studies from the authors on the thermal and odorant preferences of infective-stage Strongyloides. The data presented demonstrate that Strongyloides FL adults are attracted to higher temperatures but that at these temperatures' lifespan is reduced. Interestingly at higher temperatures Strongyloides FL adults appear to compensate for reduced lifespan by increasing reproductive capacity; this is especially true for S. stercoralis which is more adapted to tropical environments in comparison to S. ratti which has a global distribution. This manuscript not only provides comparative data for nematodes which occupy similar environmental niches (C. elegans and Strongyloides) but also begins to provide insight into the stage-specific behaviours of parasitic nematodes which facilitate their success. It also presents a novel dataset on which to build functional studies that can tease apart the underlying mechanisms responsible for such behaviours. The broader impact of these findings on the understanding of parasite transmission and infection in the context of climate change and, the potential to leverage such knowledge in pursuit of novel forms of parasite control, is particularly significant. This is an exceptionally well written manuscript built upon well considered hypothesis and experiments and illustrated with informative figures that are presented beautifully. As such, I have no significant suggestions for improvement and congratulate the authors on their work. I am keen to see this study accepted for publication in its current form. Reviewer #3: Soil-transmitted parasitic nematodes represent a major global health threat, with Strongyloides stercoralis being a potentially fatal parasite common in tropical regions. Unlike other human-parasitic nematodes, Strongyloides has a unique life cycle that includes a free-living generation where all offspring become infective larvae. Previous studies characterized the thermotactic behavior of infective forms of Strongyloides, as well as the interplay with chemotaxis to form an infection-promoting strategy. In contrast, the sensory behaviors that allow the free-living adult forms to navigate soil environments was unknown. In the present study, the behavioral thermal preference, temperature-dependent survival and reproductive potential, as well as the interplay with chemotaxis was characterized in S. stercoralis, S. ratti (a rat infecting relative species) and C. elegans (a non-parasitic free-living nematode with well characterized thermo-sensory behavior, used for comparison purpose). The frere-living forms of the two parasitic specie were found to strongly diverge frorm that of C. elegans, with a constitutive positive thermotaxis. Higher temperatures shorten the lifespan of Strongyloides, like in C. elegans. However, unlike in C. elegans, higher temperature enhanced the reproductive potential in S. stercoralis. Moreover, chemotaxis prevailed over thermotaxis in the parasitic species free living forms, which is different to the situation in infective larvae. Together, these results suggest that “living form-specific” thermotaxis and chemotaxis modulation within the same species might constitute a potential strategy to optimize parasite transmission and may explain Strongyloides' prevalence in tropical climates. The study is very well written, results presented in efficient and beautiful figures and the overall conclusions are supported by the data. The results are of potential relevance for tropical disease understanding and certainly deserve being published as they are right now. I congratulate the author for this very interesting study. I only have minor concerns, not requiring additional experiments: 1) I understand the choice of C. elegans as comparison point as it is very well studied. The classical N2 strain used here was originally isolated in Bristol, UK, and potentially further drifted genetically in the lab before being fixed as reference strain. It would have been interesting to compare Strongyloides with a free-living tropical species (e.g, the relatively well-studied C. briggsae). Obviously, it is too late to change this. But the authors could at least discuss this point and make it more apparent that the C. elegans strain used as ‘reference’ free-living species also diverges quite a lot in term of habitat. 2) Along the same line, it would be fair to mention a previous study in C. briggsae doi:10.1242/jeb.075408 . My understanding of this article is that tropical isolate of this species were performing robust negative thermotaxis. For example, JU1341 was isolated in Kerala, India, and behaved very similarly to N2. What’s more several tropical isolates displayed even more pronounced cryophilic drives, which is opposite to free-living Strongyloides in the present study, and which reinforces the idea that the positive thermotaxis (+ physiological adaptation to higher temperature for growth) in the parasitic species is really part of a move to favor future infectivity in the next generation. 3) Another limitation is that we don’t know to what extent the linear gradient assay in 2D will resemble what the worms are doing in the soil (complex 3D environment). Even if this limitation regards virtually every studied conducted with nematode in lab settings so far, it would be fair to the reader to brought it up explicitly. -------------------- PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No Reviewer #3: No Figure Files: While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Data Requirements: Please note that, as a condition of publication, PLOS' data policy requires that you make available all data used to draw the conclusions outlined in your manuscript. Data must be deposited in an appropriate repository, included within the body of the manuscript, or uploaded as supporting information. This includes all numerical values that were used to generate graphs, histograms etc.. For an example see here: http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001908#s5. Reproducibility: To enhance the reproducibility of your results, we recommend that you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. Additionally, PLOS ONE offers an option to publish peer-reviewed clinical study protocols. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols References Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article's retracted status in the References list and also include a citation and full reference for the retraction notice. |
| Revision 1 |
|
PNTD-D-24-01299R1Thermosensory behaviors of the free-living life stages of Strongyloides species support parasitism in tropical environmentsPLOS Neglected Tropical Diseases Dear Dr. Bryant, Thank you for submitting your manuscript to PLOS Neglected Tropical Diseases. After careful consideration, we feel that it has merit but does not fully meet PLOS Neglected Tropical Diseases's publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript within 30 days Dec 27 2024 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosntds@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pntd/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript: * A rebuttal letter that responds to each point raised by the editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'. This file does not need to include responses to any formatting updates and technical items listed in the 'Journal Requirements' section below. * A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'. * An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'. If you would like to make changes to your financial disclosure, competing interests statement, or data availability statement, please make these updates within the submission form at the time of resubmission. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. We look forward to receiving your revised manuscript. Kind regards, Eduardo José Lopes-Torres, Ph.D.Academic EditorPLOS Neglected Tropical Diseases Jong-Yil ChaiSection EditorPLOS Neglected Tropical Diseases Shaden Kamhawi co-Editor-in-Chief PLOS Neglected Tropical Diseases orcid.org/0000-0003-4304-636XX Paul Brindley co-Editor-in-Chief PLOS Neglected Tropical Diseases Journal Requirements: 1) Please upload all main figures as separate Figure files in .tif or .eps format. For more information about how to convert and format your figure files please see our guidelines: https://journals.plos.org/plosntds/s/figures 2) Some material included in your submission may be copyrighted. According to PLOSu2019s copyright policy, authors who use figures or other material (e.g., graphics, clipart, maps) from another author or copyright holder must demonstrate or obtain permission to publish this material under the Creative Commons Attribution 4.0 International (CC BY 4.0) License used by PLOS journals. Please closely review the details of PLOSu2019s copyright requirements here: PLOS Licenses and Copyright. If you need to request permissions from a copyright holder, you may use PLOS's Copyright Content Permission form. Please respond directly to this email and provide any known details concerning your material's license terms and permissions required for reuse, even if you have not yet obtained copyright permissions or are unsure of your material's copyright compatibility. Once you have responded and addressed all other outstanding technical requirements, you may resubmit your manuscript within Editorial Manager. Potential Copyright Issues: - Figures 4, 7, and S1. Please confirm whether you drew the images / clip-art within the figure panels by hand. If you did not draw the images, please provide (a) a link to the source of the images or icons and their license / terms of use; or (b) written permission from the copyright holder to publish the images or icons under our CC BY 4.0 license. Alternatively, you may replace the images with open source alternatives. See these open source resources you may use to replace images / clip-art: - https://commons.wikimedia.org Reviewers' comments: [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] Figure resubmission: While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. If there are other versions of figure files still present in your submission file inventory at resubmission, please replace them with the PACE-processed versions. Reproducibility: To enhance the reproducibility of your results, we recommend that authors of applicable studies deposit laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. Additionally, PLOS ONE offers an option to publish peer-reviewed clinical study protocols. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols |
| Revision 2 |
|
Dear Dr Bryant, We are pleased to inform you that your manuscript 'Thermosensory behaviors of the free-living life stages of Strongyloides species support parasitism in tropical environments' has been provisionally accepted for publication in PLOS Neglected Tropical Diseases. Before your manuscript can be formally accepted you will need to complete some formatting changes, which you will receive in a follow up email. A member of our team will be in touch with a set of requests. Please note that your manuscript will not be scheduled for publication until you have made the required changes, so a swift response is appreciated. IMPORTANT: The editorial review process is now complete. PLOS will only permit corrections to spelling, formatting or significant scientific errors from this point onwards. Requests for major changes, or any which affect the scientific understanding of your work, will cause delays to the publication date of your manuscript. Should you, your institution's press office or the journal office choose to press release your paper, you will automatically be opted out of early publication. We ask that you notify us now if you or your institution is planning to press release the article. All press must be co-ordinated with PLOS. Thank you again for supporting Open Access publishing; we are looking forward to publishing your work in PLOS Neglected Tropical Diseases. Best regards, Eduardo José Lopes-Torres, Ph.D. Academic Editor PLOS Neglected Tropical Diseases Jong-Yil Chai Section Editor PLOS Neglected Tropical Diseases Shaden Kamhawi co-Editor-in-Chief PLOS Neglected Tropical Diseases orcid.org/0000-0003-4304-636XX Paul Brindley co-Editor-in-Chief PLOS Neglected Tropical Diseases *********************************************************** |
| Formally Accepted |
|
Dear Dr Bryant, We are delighted to inform you that your manuscript, "Thermosensory behaviors of the free-living life stages of Strongyloides species support parasitism in tropical environments," has been formally accepted for publication in PLOS Neglected Tropical Diseases. We have now passed your article onto the PLOS Production Department who will complete the rest of the publication process. All authors will receive a confirmation email upon publication. The corresponding author will soon be receiving a typeset proof for review, to ensure errors have not been introduced during production. Please review the PDF proof of your manuscript carefully, as this is the last chance to correct any scientific or type-setting errors. Please note that major changes, or those which affect the scientific understanding of the work, will likely cause delays to the publication date of your manuscript. Note: Proofs for Front Matter articles (Editorial, Viewpoint, Symposium, Review, etc...) are generated on a different schedule and may not be made available as quickly. Soon after your final files are uploaded, the early version of your manuscript will be published online unless you opted out of this process. The date of the early version will be your article's publication date. The final article will be published to the same URL, and all versions of the paper will be accessible to readers. Thank you again for supporting open-access publishing; we are looking forward to publishing your work in PLOS Neglected Tropical Diseases. Best regards, Shaden Kamhawi co-Editor-in-Chief PLOS Neglected Tropical Diseases Paul Brindley co-Editor-in-Chief PLOS Neglected Tropical Diseases |
Open letter on the publication of peer review reports
PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.
We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.
Learn more at ASAPbio .