Peer Review History
| Original SubmissionMay 19, 2023 |
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Dear Dr. Adams, Thank you very much for submitting your manuscript "Preliminary characterization of Plasmodium vivax sporozoite antigens as pre-erythrocytic vaccine candidates" for consideration at PLOS Neglected Tropical Diseases. As with all papers reviewed by the journal, your manuscript was reviewed by members of the editorial board and by several independent reviewers. In light of the reviews (below this email), we would like to invite the resubmission of a significantly-revised version that takes into account the reviewers' comments. We cannot make any decision about publication until we have seen the revised manuscript and your response to the reviewers' comments. Your revised manuscript is also likely to be sent to reviewers for further evaluation. When you are ready to resubmit, please upload the following: [1] A letter containing a detailed list of your responses to the review comments and a description of the changes you have made in the manuscript. Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. [2] Two versions of the revised manuscript: one with either highlights or tracked changes denoting where the text has been changed; the other a clean version (uploaded as the manuscript file). Important additional instructions are given below your reviewer comments. Please prepare and submit your revised manuscript within 60 days. If you anticipate any delay, please let us know the expected resubmission date by replying to this email. Please note that revised manuscripts received after the 60-day due date may require evaluation and peer review similar to newly submitted manuscripts. Thank you again for your submission. We hope that our editorial process has been constructive so far, and we welcome your feedback at any time. Please don't hesitate to contact us if you have any questions or comments. Sincerely, Gregory Deye Academic Editor PLOS Neglected Tropical Diseases Charles Jaffe Section Editor PLOS Neglected Tropical Diseases *********************** Reviewer's Responses to Questions Key Review Criteria Required for Acceptance? As you describe the new analyses required for acceptance, please consider the following: Methods -Are the objectives of the study clearly articulated with a clear testable hypothesis stated? -Is the study design appropriate to address the stated objectives? -Is the population clearly described and appropriate for the hypothesis being tested? -Is the sample size sufficient to ensure adequate power to address the hypothesis being tested? -Were correct statistical analysis used to support conclusions? -Are there concerns about ethical or regulatory requirements being met? Reviewer #1: Yes for each. Reviewer #2: Some statistical analysis missing, otherwise methods are complete and clearly written. -------------------- Results -Does the analysis presented match the analysis plan? -Are the results clearly and completely presented? -Are the figures (Tables, Images) of sufficient quality for clarity? Reviewer #1: Yes for each -- minor comments below. Reviewer #2: (No Response) -------------------- Conclusions -Are the conclusions supported by the data presented? -Are the limitations of analysis clearly described? -Do the authors discuss how these data can be helpful to advance our understanding of the topic under study? -Is public health relevance addressed? Reviewer #1: Yes for each. Reviewer #2: (No Response) -------------------- Editorial and Data Presentation Modifications? Use this section for editorial suggestions as well as relatively minor modifications of existing data that would enhance clarity. If the only modifications needed are minor and/or editorial, you may wish to recommend “Minor Revision” or “Accept”. Reviewer #1: 1. In the discussion, it is stated “Since humoral effector mechanisms can be bolstered by cell-mediated responses as both play a critical role in protection…” Systems serology studies are indicating the important contribution of fc-mediated antibody functions, whereby the antibodies are providing critical support for cellular responses, for example. This could be just as important or even more important than the more classical “sporozoite neutralizing” functionality used as the over-arching objective for this study. This work should be mentioned in the discussion. 2. When discussing proteins, it would be helpful to always place a “Pv” or “Pb” before the name or mention the parasite species in the sentence or paragraph, so the reader knows what it being referred to. For example, in the Methods section “Antigen Production”, the manuscript doesn’t specify what parasite this is, although of course Pv is implied. In the corresponding Results section, it does say “P. vivax” in the heading. In line 412 it does not. This would just help smooth the reading experience. 3. Line 88: R21/Matrix-M is now licensed in two African countries, Ghana and Nigeria. 4. Line 104: suggest “in hepatocytes” rather than “in the liver” 5. Table 1, last entry – To my understanding, the Al-Nihmi reference showed that a parasite that arrests during liver stage immunity (based on knock out of SPELD) shows that (a) SPELD is needed for liver stage development and (b) sporozoites that arrest during liver stage development can induce protective immunity, which is of course not a new finding. I don’t think it shows that SPELD itself is protective. Perhaps this should be reworded as something like “pbspeld ko sporozoites arrest development during the early liver stages” emphasizing the importance of the antigen rather the fact that sporozoites are a protective immunogen which is irrelevant to the manuscript. 6. Figure 3a: I’m thinking it would be better to plot all the values for non-immunized mouse sera as individual data points in their own cloud rather than drawing the dotted line. It doesn’t look as if there is any difference between MAEBL-immunized mice and non-immunized mice. Also suggest that you use the technique of horizontal brackets at the top indicating the p-value for various comparison among the (it would then be four) clusters of data points (this technique is used in Figure 4). Also, if you are wishing to define seroconversion (dotted line), there should be some definition such as x times the median of controls or x standard deviations above controls or something similar specified in the figure legend. 7. Line 455: there is an extraneous “if” that can be omitted. 8. The manuscript mentions in several places that one approach to developing an effective vaccine would be to combine antigens. Were the antisera from these antigens looked at in combination? Reviewer #2: (No Response) -------------------- Summary and General Comments Use this section to provide overall comments, discuss strengths/weaknesses of the study, novelty, significance, general execution and scholarship. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. If requesting major revision, please articulate the new experiments that are needed. Reviewer #1: This is well written manuscript characterizing four potential Pv vaccine candidates that would function by inducing antibodies inhibiting parasite migration, hepatocyte invasion and liver stage development during the pre-erythrocytic stages of infection. The methods and results are clearly described and presented, and I have no major criticisms. The discussion and conclusion are appropriate. I feel that this work is a significant contribution to the literature and is especially important due to the dearth of effort on Pv, which, ultimately, may turn out to be the most difficult malaria parasite to control (excepting zoonotic Pk). Reviewer #2: The authors present a concise and interesting manuscript detailing the preliminary evaluation of several P. vivax pre-erythrocytic candidate antibody targets. The need for this work is high and therefore the results are of high relevance both to identify targets and identify the best means of vetting these targets preclinically given the paucity of tools for Pv. Unfortunately, serious concerns regarding the functional data keep this manuscript from being of sufficient quality to be of impact for the community. This includes unclear presentation and analysis of data as well as opaque interpretation. Critical controls are also not included. Combined with unclear presentation of some biological aspects of invasion and infection the data are overall very difficult to use to extract actionable information. Major Critiques 1. Thank you for the methods section. This will be an asset to the community. 2. Can the authors please show more than a single sporozoite for the IFAs, please? This would make their conclusions about protein localization stronger. 3. There are serious issues with the ILSDA data. a. First, how inhibition is quantified is not described clearly. Second, description of each readout is obtuse with “inhibition”, “reduced liver stage burden”, “liver stage growth and development was significantly attenuated”, “average schizont area”, and “growth attenuation” all used somewhat interchangeably and without specific references to which measure (e.g. reduction in overall liver stages, reduction in schizonts only, reduction in schizont area) is being utilized. b. Furthermore, looking at Table S2, it is unclear how any reductions are seen either in schizonts or overall burden. All conditions have numbers of large forms around or greater than the average of the “no pAb” control of 114. c. The figures seem to make comparisons between test antigen groups and DBPII for Fig 4a which is appropriate while Fig 4b compares to so serum control. The text references differences between no serum control for significance only. However, the text also notes a large impact of the DBPII serum (which should be a control for liver stages) on growth which suggest the results cannot be attributed to anything but the effects of adding mouse serum. Can the authors please clarify these inconsistencies? d. There also appears to be no positive control using an anti-PvCSP210 mAb as previously published by this group. Why is this? e. Finally, can the authors expand on why there is no impact on hypnozoites/small forms? This is intriguiging and in contrast to published work with anti-CSP mAbs. 4. ELISA titers from the immunized mice should be shown even if in supplemental. 5. If both MAEBL and SPECT1 are micronemal, why do they have different staining patterns? Micronemal localization is used to justify both the surface staining of SPECT1 and apical localization of MAEBL. Minor Critiques 6. Line 94: This sentence is difficult to understand. Is the suggestion that PvCSP in a multivalent (ie with other antigens) would increase immunogenicity? In addition, “poor immunogenicity” cannot be caused by a lack of long-lived responses rather they a lack of long-lived responses are a result/indicator of poor immunogenicity. 7. In Line 112-114, the authors state that “gliding is essential for infectivity” yet cite a publication (REF 25) in which SSP3- sporozoites are gliding deficient yet perfectly capable of infection in vivo. The next references describe parasites with varying levels of gliding with inconsistent effects on infectivity. If there is a more specific scenario in which gliding is essential, could the authors please specify such that the biological importance of in vitro gliding can be better interpreted by the uninitiated reader? 8. Similarly, the terms “gliding”, “invasion” and “infection” are used ambiguously. These are nuanced parts of the complicated parasite life cycle and therefore should be used with more precision and consistency. 9. Table I, column 1, “essentiality to invasion” is a bit misleading and would be better served by “putative function” or similar. Likewise “Association with infectivity” appears to rather be “evidence as protective immune target” 10. This is a nitpicky nuance, but since the sporozoites being used are fixed prior to staining, this is not exactly “native”. 11. Why were different t-tests used in Fig. 5? Related to this, based on the binary classification of responders vs. non-responders (using RI of 1) and the Results section which describes results in terms of the percentage responding, a proportional statistical test is likely more appropriate rather than a t-test which would be appropriate for a titer-based comparison. 12. The last line (507-509) should read something like: “the further evaluation of the immunogenicity…could aid in the development”. Given that the functionality data of this manuscript are thin and do not include any combinatorial effects this should remain a speculative statement. -------------------- PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: Yes: Brandon Wilder Figure Files: While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Data Requirements: Please note that, as a condition of publication, PLOS' data policy requires that you make available all data used to draw the conclusions outlined in your manuscript. Data must be deposited in an appropriate repository, included within the body of the manuscript, or uploaded as supporting information. This includes all numerical values that were used to generate graphs, histograms etc.. For an example see here: http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001908#s5. Reproducibility: To enhance the reproducibility of your results, we recommend that you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. 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| Revision 1 |
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Dear Dr. Adams, We are pleased to inform you that your manuscript 'Preliminary characterization of Plasmodium vivax sporozoite antigens as pre-erythrocytic vaccine candidates' has been provisionally accepted for publication in PLOS Neglected Tropical Diseases. Before your manuscript can be formally accepted you will need to complete some formatting changes, which you will receive in a follow up email. A member of our team will be in touch with a set of requests. Please note that your manuscript will not be scheduled for publication until you have made the required changes, so a swift response is appreciated. IMPORTANT: The editorial review process is now complete. PLOS will only permit corrections to spelling, formatting or significant scientific errors from this point onwards. Requests for major changes, or any which affect the scientific understanding of your work, will cause delays to the publication date of your manuscript. Should you, your institution's press office or the journal office choose to press release your paper, you will automatically be opted out of early publication. We ask that you notify us now if you or your institution is planning to press release the article. All press must be co-ordinated with PLOS. Thank you again for supporting Open Access publishing; we are looking forward to publishing your work in PLOS Neglected Tropical Diseases. Best regards, Gregory Deye Academic Editor PLOS Neglected Tropical Diseases Charles Jaffe Section Editor PLOS Neglected Tropical Diseases *********************************************************** |
| Formally Accepted |
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Dear Dr. Adams, We are delighted to inform you that your manuscript, "Preliminary characterization of Plasmodium vivax sporozoite antigens as pre-erythrocytic vaccine candidates," has been formally accepted for publication in PLOS Neglected Tropical Diseases. We have now passed your article onto the PLOS Production Department who will complete the rest of the publication process. All authors will receive a confirmation email upon publication. The corresponding author will soon be receiving a typeset proof for review, to ensure errors have not been introduced during production. Please review the PDF proof of your manuscript carefully, as this is the last chance to correct any scientific or type-setting errors. Please note that major changes, or those which affect the scientific understanding of the work, will likely cause delays to the publication date of your manuscript. Note: Proofs for Front Matter articles (Editorial, Viewpoint, Symposium, Review, etc...) are generated on a different schedule and may not be made available as quickly. Soon after your final files are uploaded, the early version of your manuscript will be published online unless you opted out of this process. The date of the early version will be your article's publication date. The final article will be published to the same URL, and all versions of the paper will be accessible to readers. Thank you again for supporting open-access publishing; we are looking forward to publishing your work in PLOS Neglected Tropical Diseases. Best regards, Shaden Kamhawi co-Editor-in-Chief PLOS Neglected Tropical Diseases Paul Brindley co-Editor-in-Chief PLOS Neglected Tropical Diseases |
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