Peer Review History

Original SubmissionOctober 29, 2021
Decision Letter - Jenifer Coburn, Editor, Richard Odame Phillips, Editor

Dear Dr. Gomes-Solecki,

Thank you very much for submitting your manuscript "Enzyme immunoassays (EIA) for serodiagnosis of human leptospirosis: IgG3/IgG1 can help define acute disease" for consideration at PLOS Neglected Tropical Diseases. As with all papers reviewed by the journal, your manuscript was reviewed by members of the editorial board and by several independent reviewers. The reviewers appreciated the attention to an important topic. Based on the reviews, we are likely to accept this manuscript for publication, providing that you modify the manuscript according to the review recommendations. I apologize for the long review process for this manuscript; it was difficult to recruit reviewers and one who agreed was so late that I have provided only two reviews.

One significant point raised in the reviews is the age of the sera used, and how the collection and storage conditions might affect the results. Please address this point in the text by either performing some tests of your ELISA-based diagnostics with fresh sera or by acknowledgint the possible limitations of using sera collected years ago.

Please prepare and submit your revised manuscript within 30 days. If you anticipate any delay, please let us know the expected resubmission date by replying to this email.

When you are ready to resubmit, please upload the following:

[1] A letter containing a detailed list of your responses to all review comments, and a description of the changes you have made in the manuscript.

Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out

[2] Two versions of the revised manuscript: one with either highlights or tracked changes denoting where the text has been changed; the other a clean version (uploaded as the manuscript file).

Important additional instructions are given below your reviewer comments.

Thank you again for your submission to our journal. We hope that our editorial process has been constructive so far, and we welcome your feedback at any time. Please don't hesitate to contact us if you have any questions or comments.

Sincerely,

Jenifer Coburn, PhD

Associate Editor

PLOS Neglected Tropical Diseases

Richard Phillips

Deputy Editor

PLOS Neglected Tropical Diseases

***********************

Reviewer's Responses to Questions

Key Review Criteria Required for Acceptance?

As you describe the new analyses required for acceptance, please consider the following:

Methods

-Are the objectives of the study clearly articulated with a clear testable hypothesis stated?

-Is the study design appropriate to address the stated objectives?

-Is the population clearly described and appropriate for the hypothesis being tested?

-Is the sample size sufficient to ensure adequate power to address the hypothesis being tested?

-Were correct statistical analysis used to support conclusions?

-Are there concerns about ethical or regulatory requirements being met?

Reviewer #1: (No Response)

Reviewer #2: -Are the objectives of the study clearly articulated with a clear testable hypothesis stated? yes

-Is the study design appropriate to address the stated objectives? yes

-Is the population clearly described and appropriate for the hypothesis being tested? yes

-Is the sample size sufficient to ensure adequate power to address the hypothesis being tested? yes

-Were correct statistical analysis used to support conclusions? yes

-Are there concerns about ethical or regulatory requirements being met? no

--------------------

Results

-Does the analysis presented match the analysis plan?

-Are the results clearly and completely presented?

-Are the figures (Tables, Images) of sufficient quality for clarity?

Reviewer #1: (No Response)

Reviewer #2: Does the analysis presented match the analysis plan? yes

-Are the results clearly and completely presented? yes

-Are the figures (Tables, Images) of sufficient quality for clarity? yes

--------------------

Conclusions

-Are the conclusions supported by the data presented?

-Are the limitations of analysis clearly described?

-Do the authors discuss how these data can be helpful to advance our understanding of the topic under study?

-Is public health relevance addressed?

Reviewer #1: (No Response)

Reviewer #2: -Are the conclusions supported by the data presented? yes

-Are the limitations of analysis clearly described? methodology needs more detail, see comments above

-Do the authors discuss how these data can be helpful to advance our understanding of the topic under study? yes

-Is public health relevance addressed? yes

--------------------

Editorial and Data Presentation Modifications?

Use this section for editorial suggestions as well as relatively minor modifications of existing data that would enhance clarity. If the only modifications needed are minor and/or editorial, you may wish to recommend “Minor Revision” or “Accept”.

Reviewer #1: (No Response)

Reviewer #2: Line 245. There is a extra % in the end of the text.

--------------------

Summary and General Comments

Use this section to provide overall comments, discuss strengths/weaknesses of the study, novelty, significance, general execution and scholarship. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. If requesting major revision, please articulate the new experiments that are needed.

Reviewer #1: The paper reported affordable in-house enzyme immunoassays using Leptospira serovars whole protein extracts and recombinant proteins, individually and in combination. The test can be performed for laboratory confirmation of leptospirosis to replace the laborious microscopic agglutination test (MAT). Interestingly, the authors showed increased sensitivities when a combination of antigens were used. This approach has been used previously to increase diagnostic sensitivity in many diseases. In general, the paper addresses an important issue, since the gold standard test (MAT) has several limitations. However, there are some concerns which should be considered.

• The study lake sera of healthy individual from same endemic areas/countries. These sera are better to assess specificity of the test.

• Purity of the recombinant proteins and their molecular sizes are not shown in Figures.

• It is not clear why the authors used sera of infected mice.

• In line 30: put the acronym (AO) in full when come first.

• Fig 1 could be omitted.

• In line 261: it is stated that whole cell extract from eight Leptospira serovars were used, however, fig 5, table 2 and table S1 show only results of 4 serovars. Some results are probably missing!

• In EIA protocol, please include Ph of the coating buffer (sod carbonate) and content/nature of the washing buffer.

• Line 718: please indicate whether substrate was incubated at dark?

• For figs 3-6 and S1, it is not clear what do the horizontal lines represent?

Reviewer #2: Fortes-Gabriel et al, describe an Enzyme immunoassays (EIA) for serodiagnosis of human leptospirosis and describe that IgG3/IgG1 can help define acute disease. This is a great effort to improve human serological diagnosis in Leptospirosis as an alternative to the laborious and expensive MAT for screening acute infections in areas where circulating serovars of pathogenic Leptospira are well defined.

Although the article is clearly described, there is room for improvements such as the following:

1. The serum collection is old (2010 and therefore the quality of these sera can be affected by the preservation methods. The text does not indicate whether they were preserved at -20 ° C or -80 ° C with or without glycerol. This maintenance directly affects the quality and preservation of the immunoglobulins, which can give variable results. This should be included in the methodology and discussed in the results.

2. Date of collection of the serum are not mentioned for PT (AZ), PT (LIS) and healthy patients from Florida

3. Line 61-62. Brucellosis is another zoonotic disease common as differential diagnosis in the African continent. Please consider this differential to be include it.

4. It is recommended to include animal reservoirs in the countries that participate and sources of contagion in the description of the disease so the One Health concept is fully addressed.

5. Could this immunoassay be adapted and be useful in animals in these regions? this can be included in the discussion

--------------------

PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: Yes: Elfadil Abass

Reviewer #2: Yes: Gabriela Hernandez-Mora

Figure Files:

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org.

Data Requirements:

Please note that, as a condition of publication, PLOS' data policy requires that you make available all data used to draw the conclusions outlined in your manuscript. Data must be deposited in an appropriate repository, included within the body of the manuscript, or uploaded as supporting information. This includes all numerical values that were used to generate graphs, histograms etc.. For an example see here: http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001908#s5.

Reproducibility:

To enhance the reproducibility of your results, we recommend that you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. Additionally, PLOS ONE offers an option to publish peer-reviewed clinical study protocols. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols

References

Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article's retracted status in the References list and also include a citation and full reference for the retraction notice.

Attachments
Attachment
Submitted filename: Comments.docx
Revision 1

Attachments
Attachment
Submitted filename: Response to reviewers 020122.docx
Decision Letter - Jenifer Coburn, Editor, Richard Odame Phillips, Editor

Dear Dr Gomes-Solecki,

We are pleased to inform you that your manuscript 'Enzyme immunoassays (EIA) for serodiagnosis of human leptospirosis: specific IgG3/IgG1 isotyping can further inform diagnosis of acute disease' has been provisionally accepted for publication in PLOS Neglected Tropical Diseases.

Before your manuscript can be formally accepted you will need to complete some formatting changes, which you will receive in a follow up email. A member of our team will be in touch with a set of requests.

Please note that your manuscript will not be scheduled for publication until you have made the required changes, so a swift response is appreciated.

IMPORTANT: The editorial review process is now complete. PLOS will only permit corrections to spelling, formatting or significant scientific errors from this point onwards. Requests for major changes, or any which affect the scientific understanding of your work, will cause delays to the publication date of your manuscript.

Should you, your institution's press office or the journal office choose to press release your paper, you will automatically be opted out of early publication. We ask that you notify us now if you or your institution is planning to press release the article. All press must be co-ordinated with PLOS.

Thank you again for supporting Open Access publishing; we are looking forward to publishing your work in PLOS Neglected Tropical Diseases.

Best regards,

Jenifer Coburn, PhD

Associate Editor

PLOS Neglected Tropical Diseases

Richard Phillips

Deputy Editor

PLOS Neglected Tropical Diseases

***********************************************************

Formally Accepted
Acceptance Letter - Jenifer Coburn, Editor, Richard Odame Phillips, Editor

Dear Dr Gomes-Solecki,

We are delighted to inform you that your manuscript, "Enzyme immunoassays (EIA) for serodiagnosis of human leptospirosis: specific IgG3/IgG1 isotyping may further inform diagnosis of acute disease," has been formally accepted for publication in PLOS Neglected Tropical Diseases.

We have now passed your article onto the PLOS Production Department who will complete the rest of the publication process. All authors will receive a confirmation email upon publication.

The corresponding author will soon be receiving a typeset proof for review, to ensure errors have not been introduced during production. Please review the PDF proof of your manuscript carefully, as this is the last chance to correct any scientific or type-setting errors. Please note that major changes, or those which affect the scientific understanding of the work, will likely cause delays to the publication date of your manuscript. Note: Proofs for Front Matter articles (Editorial, Viewpoint, Symposium, Review, etc...) are generated on a different schedule and may not be made available as quickly.

Soon after your final files are uploaded, the early version of your manuscript will be published online unless you opted out of this process. The date of the early version will be your article's publication date. The final article will be published to the same URL, and all versions of the paper will be accessible to readers.

Thank you again for supporting open-access publishing; we are looking forward to publishing your work in PLOS Neglected Tropical Diseases.

Best regards,

Shaden Kamhawi

co-Editor-in-Chief

PLOS Neglected Tropical Diseases

Paul Brindley

co-Editor-in-Chief

PLOS Neglected Tropical Diseases

Open letter on the publication of peer review reports

PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.

We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.

Learn more at ASAPbio .