Table 1.
Resistance patterns found in 28 Salmonella isolates from commercial swine farms in the Antioquia, Colombia.
Fig 1.
The geographical map depicts the location of Salmonella isolates in the different municipalities of Antioquia, Colombia.
The base map shapefile used in Qgis 3.34 was sourced from the publicly database Colombia en Mapas (https://www.colombiaenmapas.gov.co/).
Fig 2.
Serovar Typhimurium isolates from Colombia are most similar to human isolates.
All Salmonella serovar Typhimurium isolates from Colombia in the Enterobase database are shown on a GrapeTree plot using cgMLST profiles to show phylogenetic distance. White circles highlighted in red are isolates from this study. (Scale bar) Number of cgMLST pairwise allelic differences (PADs). “Missing” on the figure legend indicates the source type was not included in the metadata for included samples.
Fig 3.
Serovar I, 4,[5], 12:i:-isolates from swine are closely related to isolates from Ecuador and Brazil.
All Salmonella serovar I, 4,[5], 12:i:- isolates from swine in the Enterobase database are shown on a GrapeTree plot using cgMLST profiles to show phylogenetic distance. White circles highlighted in red are isolates from this study. (Scale bar) Number of cgMLST pairwise allelic differences (PADs). “Missing” on the figure legend indicates the country of sample origin was not included in the metadata for included samples.
Fig 4.
Serovar I, 4[5], 12:i:- isolates from Colombia show divergence of two clusters.
All Salmonella serovar 1, 4[5], 12:i:- isolates from Colombia in the Enterobase database are shown on a GrapeTree plot using cgMLST profiles to show phylogenetic distance. White circles highlighted in red are isolates from this study. (Scale bar) Number of cgMLST pairwise allelic differences (PADs). “Missing” on the figure legend indicates the source type was not included in the metadata for included samples.
Table 2.
AMR genes combinations and phenotypic resistance patterns in Salmonella serovars recovered from swine production in Antioquia, Colombia.