Fig 1.
Map of the study area, Zadié Department, Gabon.
In the country-wide map of Gabon (upper left), the study area is surrounded by a dotted red circle. Each pie chart represents a village where hunters brought back and sold bushmeat. The sizes of the pie charts correlate with the total number of animals sampled for each village, and the colors indicate different animal species. Map data OpenStreetMap contributors, licensed under ODbL (https://www.openstreetmap.org/copyright).
Table 1.
Toxoplasma gondii microsatellite analysis of organ samples from Gabonese wild animals and a comparison with other Gabonese, African and global isolates. New MS alleles are indicated in bold letters.
Fig 2.
Neighbor-joining tree showing the relationships between Gabon-87_2019-Cephalophus-sp and other global multilocus genotypes (MLGs) (n = 1059) from previous studies.
Fig 3.
Factorial correspondence analysis (AFC) technique including Gabon-87_2019-Cephalophus-sp and other global multilocus genotypes (MLGs) (n = 1059) from previous studies.
Fig 4.
Comparison of Toxoplasma gondii genome Gabon-87_2019-Cephalophus-sp to reference genomes representing the global haplogroups.
The barplots represent the numbers of Illumina reads exclusively mapping to each of the 16 respective reference genomes. These references genomes are GT1 (USA; type I; hg1; GCA_000149715.2), ME49 (USA; type II; hg2; GCA_000006565.2), VEG (USA; type III; hg3; GCA_000150015.2), MAS (unknown origin; hg4; GCA_000224865.2), RUB (French Guiana; Amazonian; hg5; GCA_000224805.2), FOU (unknown origin; Africa 1; hg6; GCA_000224905.2), TgCtBr9 (Brazil; hg6; GCA_000224825.1), CAST (USA; hg7; GCA_000256705.1), TgCtBr5 (Brazil; hg8; GCA_000259835.1), P89 (USA; hg9; GCA_000224885.2), VAND (French Guiana; Amazonian; hg10; GCA_000224845.2), COUG (Canada; Pan-American; hg11; GCA_000338675.1), ARI (USA; type 12; hg12; GCA_000250965.1), TgCtPRC2 (China; Chinese 1; hg13; GCA_000256725.1), GAB2-2007-GAL-DOM2 (Gabon; Africa 3; hg14; GCA_000325525.2) and TgCtCo5 (Colombia; hg15; GCA_000278365.1).