Fig 1.
Epidemiological information showing.
(A) number of Salmonella isolated received from the different sentinel hospitals at different years, and (B) Number of different Salmonella serotypes received from the different sentinel hospitals.
Fig 2.
Grape tree showing core genome MLST of S. Typhi from human sources in Africa, deposited in the EnteroBase database.
Red leaf labels are genomes from this study.
Fig 3.
SNP-phylogeny based tree and gene presence/absence showing the genomic profile of Salmonella Typhi genomes retrieved from 5 sentinel laboratories in Nigeria.
ARGs: antibiotic resistance genes, STs: Sequence types.
Fig 4.
Grape tree showing core genome MLST of S. Enteritidis from human sources in Africa, deposited in the EnteroBase database.
Red leaf labels are genomes from this study.
Fig 5.
SNP-phylogeny based tree and gene presence/absence map showing the genomic profile of Salmonella Enteritidis retrieved from 3 sentinel laboratories in Nigeria.
ARGs: antibiotic resistance genes, STs: Sequence types.
Fig 6.
Gene presence/absence map showing the genomic profile of non-typhoidal Salmonella retrieved from 5 sentinel laboratories in Nigeria.
ARGs: antibiotic resistance genes, STs: Sequence types.
Fig 7.
Frequency of occurrence of Salmonella pathogenicity island in TS (Typhoidal Salmonella) and NTS (Non-typhoidal Salmonella) in this study.