Molecular detection and genetic characterisation of a large flood-borne outbreak of human leptospirosis in Jakarta, Indonesia: A retrospective analysis of surveillance data

• Erni Juwita Nelwan ,

  Roles Conceptualization, Funding acquisition, Supervision, Writing – review & editing

  ¶‡ These authors contributed equally to this work and share first authorship.

  Affiliations Division of Tropical Medicine and Infectious Diseases, Department of Internal Medicine, Faculty of Medicine Universitas Indonesia/Cipto Mangunkusumo Hospital, Jakarta, Indonesia, Infectious Disease and Immunology Research Center, Indonesian Medical Education and Research Institute, Faculty of Medicine, Universitas Indonesia, Jakarta, Indonesia

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• Yunita Windi Anggraini ,

  Roles Formal analysis, Investigation, Methodology, Visualization, Writing – original draft

  ¶‡ These authors contributed equally to this work and share first authorship.

  Affiliations Infectious Disease and Immunology Research Center, Indonesian Medical Education and Research Institute, Faculty of Medicine, Universitas Indonesia, Jakarta, Indonesia, Oxford University Clinical Research Unit Indonesia, Faculty of Medicine, Universitas Indonesia, Jakarta, Indonesia

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• Sabighoh Zanjabila,

  Roles Formal analysis, Investigation, Methodology, Project administration, Visualization

  Affiliations Infectious Disease and Immunology Research Center, Indonesian Medical Education and Research Institute, Faculty of Medicine, Universitas Indonesia, Jakarta, Indonesia, Oxford University Clinical Research Unit Indonesia, Faculty of Medicine, Universitas Indonesia, Jakarta, Indonesia

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• Budi Setiawan,

  Roles Data curation

  Affiliation Jakarta Health Office, Jakarta, Indonesia

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• Suhartiningsih Suhartiningsih,

  Affiliation Regional Health Laboratory, Jakarta, Indonesia

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• Farida Dwi Handayani,

  Roles Methodology, Writing – review & editing

  Affiliation Eijkman Research Center for Molecular Biology-Indonesian National Research and Innovation Agency, Cibinong Bogor Regency, Jakarta, Indonesia

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• Jeny Jeny,

  Affiliation Oxford University Clinical Research Unit Indonesia, Faculty of Medicine, Universitas Indonesia, Jakarta, Indonesia

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• Linda Erlina,

  Roles Formal analysis, Methodology, Visualization

  Affiliations Bioinformatics Core Facilities, Indonesian Medical Education and Research Institute, Faculty of Medicine, Universitas Indonesia, Jakarta, Indonesia, Department of Medical Chemistry, Faculty of Medicine, Universitas Indonesia, Jakarta, Indonesia

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• Fadilah Fadilah,

  Roles Formal analysis, Visualization

  Affiliations Bioinformatics Core Facilities, Indonesian Medical Education and Research Institute, Faculty of Medicine, Universitas Indonesia, Jakarta, Indonesia, Department of Medical Chemistry, Faculty of Medicine, Universitas Indonesia, Jakarta, Indonesia

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• J. Kevin Baird,

  Roles Funding acquisition

  Affiliations Oxford University Clinical Research Unit Indonesia, Faculty of Medicine, Universitas Indonesia, Jakarta, Indonesia, Centre for Tropical Medicine and Global Health, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom

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• Raph L. Hamers,

  Roles Conceptualization, Funding acquisition

  Affiliations Oxford University Clinical Research Unit Indonesia, Faculty of Medicine, Universitas Indonesia, Jakarta, Indonesia, Centre for Tropical Medicine and Global Health, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom

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• Suwarti Suwarti

  Roles Conceptualization, Funding acquisition, Investigation, Methodology, Supervision, Visualization, Writing – review & editing

  * E-mail: suwarti@oucru.org

  Affiliations Infectious Disease and Immunology Research Center, Indonesian Medical Education and Research Institute, Faculty of Medicine, Universitas Indonesia, Jakarta, Indonesia, Oxford University Clinical Research Unit Indonesia, Faculty of Medicine, Universitas Indonesia, Jakarta, Indonesia

  https://orcid.org/0000-0002-4726-7998

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