Genomic characterization of Sabiá virus in Brazil, 2019–2020: Implications for diagnostics, virus evolution, and receptor binding

• Ingra M. Claro ,

  Contributed equally to this work with: Ingra M. Claro, Erika R. Manuli, Camila A. M. da Silva, Thaís M. Coletti

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Resources, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Departamento de Moléstias Infecciosas e Parasitárias, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil, Instituto de Medicina Tropical, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil, School of Public Health, Imperial College London, MRC Centre for Global Infectious Disease Analysis and the Abdul Latif Jameel Institute for Disease and Emergency Analytics (J-IDEA), London, United Kingdom, Department of Microbiology, Immunology and Molecular Genetics, College of Medicine, University of Kentucky, Lexington, Kentucky, United States of America

  https://orcid.org/0000-0001-8637-2910

  ⨯
• Erika R. Manuli ,

  Contributed equally to this work with: Ingra M. Claro, Erika R. Manuli, Camila A. M. da Silva, Thaís M. Coletti

  Roles Data curation, Investigation, Methodology, Writing – original draft, Writing – review & editing

  Affiliations Departamento de Moléstias Infecciosas e Parasitárias, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil, Instituto de Medicina Tropical, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil, Universidade Municipal de São Caetano do Sul, São Caetano do Sul, São Paulo, Brazil

  ⨯
• Camila A. M. da Silva ,

  Contributed equally to this work with: Ingra M. Claro, Erika R. Manuli, Camila A. M. da Silva, Thaís M. Coletti

  Roles Data curation, Investigation, Methodology, Writing – original draft, Writing – review & editing

  Affiliations Departamento de Moléstias Infecciosas e Parasitárias, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil, Instituto de Medicina Tropical, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil

  ⨯
• Thaís M. Coletti ,

  Contributed equally to this work with: Ingra M. Claro, Erika R. Manuli, Camila A. M. da Silva, Thaís M. Coletti

  Roles Data curation, Investigation, Methodology, Writing – original draft, Writing – review & editing

  Affiliations Departamento de Moléstias Infecciosas e Parasitárias, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil, Instituto de Medicina Tropical, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil

  ⨯
• Philippe Lemey,

  Roles Data curation, Formal analysis, Investigation, Methodology, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven – University of Leuven, Leuven, Belgium

  ⨯
• Ana Catharina Nastri,

  Roles Data curation, Investigation, Writing – original draft, Writing – review & editing

  Affiliation Divisão de Doenças Infecciosas, Hospital das Clínicas, Faculdade de Medicina, Universidade de São Paulo, São Paulo, Brazil

  ⨯
• Luciana Vilas Boas Casadio,

  Roles Data curation, Investigation, Writing – original draft, Writing – review & editing

  Affiliation Divisão de Doenças Infecciosas, Hospital das Clínicas, Faculdade de Medicina, Universidade de São Paulo, São Paulo, Brazil

  ⨯
• Amaro Nunes Duarte-Neto,

  Roles Data curation, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Departamento de Patologia, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil, Núcleo de Anatomia Patológica, Instituto Adolfo Lutz, São Paulo, Brazil

  ⨯
• Joshua Quick,

  Roles Data curation, Formal analysis, Investigation, Methodology, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation School of Biosciences, University of Birmingham, Birmingham, United Kingdom

  ⨯
• Camila M. Romano,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Departamento de Moléstias Infecciosas e Parasitárias, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil, Instituto de Medicina Tropical, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil

  ⨯
• Charles Whittaker,

  Roles Investigation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation School of Public Health, Imperial College London, MRC Centre for Global Infectious Disease Analysis and the Abdul Latif Jameel Institute for Disease and Emergency Analytics (J-IDEA), London, United Kingdom

  ⨯
• Sarah C. Hill,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Department of Biology, University of Oxford, Oxford, United Kingdom, Department of Pathobiology and Population Sciences, Royal Veterinary College, Hatfield, United Kingdom

  ⨯
• Carlos A. Prete,

  Roles Formal analysis, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Departamento de Engenharia de Sistemas Eletrônicos, Escola Politécnica da Universidade de São Paulo, São Paulo, Brazil

  ⨯
• Darlan S. Candido,

  Roles Conceptualization, Formal analysis, Investigation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation School of Public Health, Imperial College London, MRC Centre for Global Infectious Disease Analysis and the Abdul Latif Jameel Institute for Disease and Emergency Analytics (J-IDEA), London, United Kingdom

  ⨯
• Filipe R. R. Moreira,

  Roles Data curation, Formal analysis, Investigation, Visualization, Writing – original draft, Writing – review & editing

  Affiliations School of Public Health, Imperial College London, MRC Centre for Global Infectious Disease Analysis and the Abdul Latif Jameel Institute for Disease and Emergency Analytics (J-IDEA), London, United Kingdom, Departamento de Genética, Instituto de Biologia, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil

  ⨯
• Mariana S. Ramundo,

  Roles Conceptualization, Formal analysis, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Departamento de Moléstias Infecciosas e Parasitárias, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil, Instituto de Medicina Tropical, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil, Laboratório de Imunologia, INCOR, Hospital das Clinicas HCFMUSP, Faculdade de Medicina, Universidade de São Paulo, São Paulo, Brazil, Departamento de Clínica Médica, Disciplina de Imunologia Clínica e Alergia, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil

  ⨯
• Ian Nunes Valença,

  Roles Data curation, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Departamento de Moléstias Infecciosas e Parasitárias, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil, Instituto de Medicina Tropical, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil, School of Public Health, Imperial College London, MRC Centre for Global Infectious Disease Analysis and the Abdul Latif Jameel Institute for Disease and Emergency Analytics (J-IDEA), London, United Kingdom

  ⨯
• Jaqueline G. de Jesus,

  Roles Data curation, Formal analysis, Investigation, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Departamento de Moléstias Infecciosas e Parasitárias, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil, Instituto de Medicina Tropical, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil

  ⨯
• Flavia C. S. Sales,

  Roles Data curation, Investigation, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Departamento de Moléstias Infecciosas e Parasitárias, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil, Instituto de Medicina Tropical, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil

  ⨯
• Mariana S. Cunha,

  Roles Investigation, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Departamento de Moléstias Infecciosas e Parasitárias, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil, Instituto de Medicina Tropical, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil, Centro de Virologia, Núcleo de Doenças de Transmissão Vetorial, Instituto Adolfo Lutz, São Paulo, Brazil

  ⨯
• Juliana M. Guerra,

  Roles Investigation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Núcleo de Anatomia Patológica, Instituto Adolfo Lutz, São Paulo, Brazil

  ⨯
• Maria Cassia Mendes-Correa,

  Roles Investigation, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Departamento de Moléstias Infecciosas e Parasitárias, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil, Instituto de Medicina Tropical, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil

  ⨯
• Tania R. Tozetto-Mendoza,

  Roles Investigation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Instituto de Medicina Tropical, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil

  ⨯
• Marcilio Jorge Fumagalli,

  Roles Investigation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Centro de Pesquisa em Virologia, Faculdade de Medicina de Ribeirão Preto, Universidade de São Paulo, Ribeirão Preto, Brazil

  ⨯
• Yeh-Li Ho,

  Roles Investigation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Divisão de Doenças Infecciosas, Hospital das Clínicas, Faculdade de Medicina, Universidade de São Paulo, São Paulo, Brazil

  ⨯
• Peter Simmonds,

  Roles Investigation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Department of Pathobiology and Population Sciences, Royal Veterinary College, Hatfield, United Kingdom

  ⨯
• Weng M. Ng,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Research Complex at Harwell, Harwell Science and Innovation Campus, Didcot, United Kingdom, Electron Bio-Imaging Centre, Diamond Light Source, Didcot, United Kingdom, Division of Structural Biology, Centre for Human Genetics, University of Oxford, Oxford, United Kingdom

  ⨯
• Thomas A. Bowden,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Division of Structural Biology, Centre for Human Genetics, University of Oxford, Oxford, United Kingdom

  ⨯
• William M. de Souza,

  Roles Investigation, Methodology, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Department of Microbiology, Immunology and Molecular Genetics, College of Medicine, University of Kentucky, Lexington, Kentucky, United States of America

  ⨯
• Oliver G. Pybus,

  Roles Investigation, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Department of Biology, University of Oxford, Oxford, United Kingdom, Department of Pathobiology and Population Sciences, Royal Veterinary College, Hatfield, United Kingdom

  ⨯
• Anna S. Levin ,

  Roles Conceptualization, Investigation, Supervision, Visualization, Writing – original draft, Writing – review & editing

  ¶‡ These senior authors contributed equally to this work.

  Affiliations Departamento de Moléstias Infecciosas e Parasitárias, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil, Instituto de Medicina Tropical, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil, Department of Infection Control, Hospital das Clínicas, Faculdade de Medicina, Universidade de São Paulo, São Paulo, Brazil

  ⨯
• Nicholas Loman ,

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: nfaria@ic.ac.uk (NRF); sabinoec@usp.br (ECS); nick@loman.net (NL)

  ¶‡ These senior authors contributed equally to this work.

  Affiliation School of Biosciences, University of Birmingham, Birmingham, United Kingdom

  ⨯
• Ester C. Sabino ,

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: nfaria@ic.ac.uk (NRF); sabinoec@usp.br (ECS); nick@loman.net (NL)

  ¶‡ These senior authors contributed equally to this work.

  Affiliations Departamento de Moléstias Infecciosas e Parasitárias, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil, Instituto de Medicina Tropical, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil, Universidade Municipal de São Caetano do Sul, São Caetano do Sul, São Paulo, Brazil

  ⨯
•  [ ... ],
• Nuno R. Faria

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: nfaria@ic.ac.uk (NRF); sabinoec@usp.br (ECS); nick@loman.net (NL)

  ¶‡ These senior authors contributed equally to this work.

  Affiliations Departamento de Moléstias Infecciosas e Parasitárias, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil, Instituto de Medicina Tropical, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil, School of Public Health, Imperial College London, MRC Centre for Global Infectious Disease Analysis and the Abdul Latif Jameel Institute for Disease and Emergency Analytics (J-IDEA), London, United Kingdom

  https://orcid.org/0000-0001-8839-2798

  ⨯
• [ view all ]
• [ view less ]