Determining genotype and antimicrobial resistance of Salmonella Typhi in environmental samples by amplicon sequencing

• Catherine Troman ,

  Roles Formal analysis, Investigation, Methodology, Writing – original draft, Writing – review & editing

  * E-mail: c.troman@imperial.ac.uk

  Affiliation Department of Infectious Disease Epidemiology & MRC Centre for Global Infectious Disease Analysis, School of Public Health, Imperial College London, London, United Kingdom

  https://orcid.org/0000-0001-8584-7785

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• Samuel T. Horsfield,

  Roles Conceptualization, Investigation, Methodology, Writing – review & editing

  Affiliations Department of Infectious Disease Epidemiology & MRC Centre for Global Infectious Disease Analysis, School of Public Health, Imperial College London, London, United Kingdom, European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, United Kingdom

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• Dilip Abraham,

  Roles Formal analysis, Investigation, Resources, Writing – review & editing

  Affiliation Christian Medical College, Vellore, India

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• Venkata Raghava Mohan,

  Roles Investigation, Resources

  Affiliation Christian Medical College, Vellore, India

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• Sidhartha Giri,

  Roles Investigation, Resources

  Affiliation Christian Medical College, Vellore, India

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• Satheesh Nair,

  Roles Resources, Writing – review & editing

  Affiliation Gastrointestinal Bacteria Reference Unit, UK Health Security Agency, London, United Kingdom

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• Alexander G. Shaw,

  Roles Conceptualization, Supervision, Writing – review & editing

  Affiliation Department of Infectious Disease Epidemiology & MRC Centre for Global Infectious Disease Analysis, School of Public Health, Imperial College London, London, United Kingdom

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• Zoe Dyson,

  Roles Software, Writing – review & editing

  Affiliations Department of Infection Biology, Faculty of Infectious and Tropical Diseases, London School of Hygiene and Tropical Medicine, London, United Kingdom, Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, United Kingdom

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• Kathryn E. Holt,

  Roles Software, Writing – review & editing

  Affiliation Department of Infection Biology, Faculty of Infectious and Tropical Diseases, London School of Hygiene and Tropical Medicine, London, United Kingdom

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• Nicholas C. Grassly

  Roles Conceptualization, Funding acquisition, Supervision, Writing – review & editing

  Affiliation Department of Infectious Disease Epidemiology & MRC Centre for Global Infectious Disease Analysis, School of Public Health, Imperial College London, London, United Kingdom

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