Epidemiological and genomic investigation of chikungunya virus in Rio de Janeiro state, Brazil, between 2015 and 2018

• Filipe Romero Rebello Moreira,

  Roles Data curation, Formal analysis, Investigation, Methodology, Software, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Departamento de Genética, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Rio de Janeiro, Brazil, MRC Centre for Global Infectious Disease Analysis, Jameel Institute, Imperial College London, London, United Kingdom

  https://orcid.org/0000-0002-7162-5070

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• Mariane Talon de Menezes,

  Roles Data curation, Investigation, Methodology, Writing – review & editing

  Affiliation Departamento de Genética, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Rio de Janeiro, Brazil

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• Clarisse Salgado-Benvindo,

  Roles Data curation, Investigation, Methodology, Writing – review & editing

  Affiliations Departamento de Genética, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Rio de Janeiro, Brazil, Department of Medical Microbiology, Leiden University Medical Center, Leiden, The Netherlands

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• Charles Whittaker,

  Roles Formal analysis, Investigation, Writing – review & editing

  Affiliation MRC Centre for Global Infectious Disease Analysis, Jameel Institute, Imperial College London, London, United Kingdom

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• Victoria Cox,

  Roles Formal analysis, Investigation, Writing – review & editing

  Affiliation MRC Centre for Global Infectious Disease Analysis, Jameel Institute, Imperial College London, London, United Kingdom

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• Nilani Chandradeva,

  Roles Formal analysis, Investigation, Writing – review & editing

  Affiliation MRC Centre for Global Infectious Disease Analysis, Jameel Institute, Imperial College London, London, United Kingdom

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• Hury Hellen Souza de Paula,

  Roles Data curation, Investigation, Writing – review & editing

  Affiliation Departamento de Saúde, Programa de Pós-graduação em Biomedicina Translacional, Universidade do Grande Rio (UNIGRANRIO), Duque de Caxias, Rio de Janeiro, Brazil

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• André Frederico Martins,

  Roles Data curation, Investigation, Writing – review & editing

  Affiliation Departamento de Saúde, Programa de Pós-graduação em Biomedicina Translacional, Universidade do Grande Rio (UNIGRANRIO), Duque de Caxias, Rio de Janeiro, Brazil

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• Raphael Rangel das Chagas,

  Roles Data curation, Investigation, Writing – review & editing

  Affiliation Departamento de Saúde, Programa de Pós-graduação em Biomedicina Translacional, Universidade do Grande Rio (UNIGRANRIO), Duque de Caxias, Rio de Janeiro, Brazil

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• Rodrigo Decembrino Vargas Brasil,

  Roles Data curation, Investigation, Writing – review & editing

  Affiliation Departamento de Saúde, Programa de Pós-graduação em Biomedicina Translacional, Universidade do Grande Rio (UNIGRANRIO), Duque de Caxias, Rio de Janeiro, Brazil

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• Darlan da Silva Cândido,

  Roles Formal analysis, Methodology, Software, Writing – review & editing

  Affiliations MRC Centre for Global Infectious Disease Analysis, Jameel Institute, Imperial College London, London, United Kingdom, Department of Zoology, University of Oxford, Oxford, United Kingdom

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• Alice Laschuk Herlinger,

  Roles Investigation, Writing – review & editing

  Affiliation Departamento de Genética, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Rio de Janeiro, Brazil

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• Marisa de Oliveira Ribeiro,

  Roles Methodology, Writing – review & editing

  Affiliation Institute of Technology in Immunobiology Bio-Manguinhos, Oswaldo Cruz Foundation/ Fiocruz, Rio de Janeiro, Brazil

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• Monica Barcellos Arruda,

  Roles Methodology, Writing – review & editing

  Affiliation Institute of Technology in Immunobiology Bio-Manguinhos, Oswaldo Cruz Foundation/ Fiocruz, Rio de Janeiro, Brazil

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• Patricia Alvarez,

  Roles Investigation, Writing – review & editing

  Affiliation Institute of Technology in Immunobiology Bio-Manguinhos, Oswaldo Cruz Foundation/ Fiocruz, Rio de Janeiro, Brazil

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• Marcelo Calado de Paula Tôrres,

  Roles Conceptualization, Investigation, Writing – review & editing

  Affiliation Departamento de Genética, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Rio de Janeiro, Brazil

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• Ilaria Dorigatti,

  Roles Formal analysis, Investigation, Writing – review & editing

  Affiliation MRC Centre for Global Infectious Disease Analysis, Jameel Institute, Imperial College London, London, United Kingdom

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• Oliver Brady,

  Roles Formal analysis, Investigation, Writing – review & editing

  Affiliations Centre for the Mathematical Modelling of Infectious Diseases, London School of Hygiene & Tropical Medicine, London, United Kingdom, Department of Infectious Disease Epidemiology, Faculty of Epidemiology and Population Health, London School of Hygiene & Tropical Medicine, London, United Kingdom

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• Carolina Moreira Voloch,

  Roles Formal analysis, Methodology, Resources, Writing – review & editing

  Affiliation Departamento de Genética, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Rio de Janeiro, Brazil

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• Amilcar Tanuri,

  Roles Conceptualization, Funding acquisition, Resources, Writing – review & editing

  Affiliation Departamento de Genética, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Rio de Janeiro, Brazil

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• Felipe Iani,

  Roles Data curation, Writing – review & editing

  Affiliation Fundação Ezequiel Dias (FUNED), Belo Horizonte, Minas Gerais, Brazil

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• William Marciel de Souza,

  Roles Investigation, Writing – review & editing

  Affiliations Department of Microbiology and Immunology, University of Texas Medical Branch, Galveston, Texas, United States of America, World Reference Center for Emerging Viruses and Arboviruses, University of Texas Medical Branch, Galveston, Texas, United States of America

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• Sergian Vianna Cardozo,

  Roles Conceptualization, Data curation, Investigation, Methodology, Project administration, Supervision, Writing – review & editing

  Affiliation Departamento de Saúde, Programa de Pós-graduação em Biomedicina Translacional, Universidade do Grande Rio (UNIGRANRIO), Duque de Caxias, Rio de Janeiro, Brazil

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• Nuno Rodrigues Faria ,

  Roles Conceptualization, Formal analysis, Methodology, Resources, Supervision, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: n.faria@imperial.ac.uk (NRF); santanarnt@gmail.com (RSA)

  Affiliations MRC Centre for Global Infectious Disease Analysis, Jameel Institute, Imperial College London, London, United Kingdom, Department of Zoology, University of Oxford, Oxford, United Kingdom, Instituto de Medicina Tropical, Faculdade de Medicina da Universidade de São Paulo, São Paulo, São Paulo, Brazil

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•  [ ... ],
• Renato Santana Aguiar

  Roles Conceptualization, Funding acquisition, Methodology, Project administration, Resources, Supervision, Writing – review & editing

  * E-mail: n.faria@imperial.ac.uk (NRF); santanarnt@gmail.com (RSA)

  Affiliations Departamento de Genética, Ecologia e Evolução, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil, Instituto D’or, Rio de Janeiro, Rio de Janeiro, Brazil

  https://orcid.org/0000-0001-5180-3717

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