Genomic epidemiological analysis of county-scale Yersinia pestis spread pattern over 50 years in a Southwest Chinese prefecture

Jingliang Qin; Liyuan Shi; Yarong Wu; Jinjiao Kong; Xiuwei Qian; Xianglilan Zhang; Xiujuan Zuo; Hang Fan; Yan Guo; Mengnan Cui; Shanshan Dong; Hongli Tan; Youhong Zhong; Yajun Song; Ruifu Yang; Peng Wang; Yujun Cui

doi:10.1371/journal.pntd.0011527

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Peer-reviewed

Research Article

Genomic epidemiological analysis of county-scale Yersinia pestis spread pattern over 50 years in a Southwest Chinese prefecture

Jingliang Qin ,

Contributed equally to this work with: Jingliang Qin, Liyuan Shi, Yarong Wu, Jinjiao Kong

Roles Formal analysis, Methodology, Software, Visualization, Writing – original draft, Writing – review & editing

Affiliation State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China
⨯
Liyuan Shi ,

Contributed equally to this work with: Jingliang Qin, Liyuan Shi, Yarong Wu, Jinjiao Kong

Roles Conceptualization, Data curation, Funding acquisition, Investigation, Validation, Writing – review & editing

Affiliation Yunnan Institute of Endemic Diseases Control and Prevention, Dali, China
⨯
Yarong Wu ,

Contributed equally to this work with: Jingliang Qin, Liyuan Shi, Yarong Wu, Jinjiao Kong

Roles Formal analysis, Methodology, Software, Writing – original draft, Writing – review & editing

Affiliation State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China
⨯
Jinjiao Kong ,

Contributed equally to this work with: Jingliang Qin, Liyuan Shi, Yarong Wu, Jinjiao Kong

Roles Data curation, Investigation, Validation, Writing – original draft, Writing – review & editing

Affiliation Yunnan Institute of Endemic Diseases Control and Prevention, Dali, China
⨯
Xiuwei Qian,

Roles Formal analysis, Validation

Affiliation State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China
⨯
Xianglilan Zhang,

Roles Methodology, Supervision

Affiliation State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China
⨯
Xiujuan Zuo,

Roles Data curation, Software

Affiliation State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China
⨯
Hang Fan,

Roles Supervision, Validation

Affiliation State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China
⨯
Yan Guo,

Roles Investigation

Affiliation State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China
⨯
Mengnan Cui,

Roles Investigation

Affiliation State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China
⨯
Shanshan Dong,

Roles Conceptualization

Affiliation Yunnan Institute of Endemic Diseases Control and Prevention, Dali, China
⨯
Hongli Tan,

Roles Investigation

Affiliation Yunnan Institute of Endemic Diseases Control and Prevention, Dali, China
⨯
Youhong Zhong,

Roles Investigation

Affiliation Yunnan Institute of Endemic Diseases Control and Prevention, Dali, China
⨯
Yajun Song,

Roles Formal analysis, Supervision

Affiliation State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China
⨯
Ruifu Yang,

Roles Conceptualization, Formal analysis, Resources, Supervision

Affiliation State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China
⨯
Peng Wang ,

Roles Conceptualization, Formal analysis, Funding acquisition, Methodology, Project administration, Resources, Supervision

* E-mail: wp030801@126.com (PW); cuiyujun.new@gmail.com (YC)

Affiliation Yunnan Institute of Endemic Diseases Control and Prevention, Dali, China

https://orcid.org/0000-0002-3350-1835

⨯
[ ... ],
Yujun Cui

Roles Conceptualization, Formal analysis, Funding acquisition, Methodology, Project administration, Resources, Supervision, Writing – original draft, Writing – review & editing

* E-mail: wp030801@126.com (PW); cuiyujun.new@gmail.com (YC)

Affiliation State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China

https://orcid.org/0000-0001-7236-2412

⨯
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Genomic epidemiological analysis of county-scale Yersinia pestis spread pattern over 50 years in a Southwest Chinese prefecture

Jingliang Qin,
Liyuan Shi,
Yarong Wu,
Jinjiao Kong,
Xiuwei Qian,
Xianglilan Zhang,
Xiujuan Zuo,
Hang Fan,
Yan Guo,
Mengnan Cui

Published: August 7, 2023
https://doi.org/10.1371/journal.pntd.0011527

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