Salmonella Typhi whole genome sequencing in Rwanda shows a diverse historical population with recent introduction of haplotype H58

• Jean Pierre Rutanga ,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Software, Writing – original draft, Writing – review & editing

  * E-mail: j.rutanga@ur.ac.rw

  Affiliations College of Science and Technology, University of Rwanda, Kigali, Rwanda, Institute of Tropical Medicine, Antwerp, Belgium, Department of Microbiology, Immunology and Transplantation, KU Leuven, Leuven, Belgium

  https://orcid.org/0000-0002-5273-6170

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• Tessa de Block,

  Roles Formal analysis, Methodology, Writing – review & editing

  Affiliation Institute of Tropical Medicine, Antwerp, Belgium

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• Wim L. Cuypers,

  Roles Methodology, Software, Writing – review & editing

  Affiliations Institute of Tropical Medicine, Antwerp, Belgium, Department of Computer Science, University of Antwerp, Antwerp, Belgium

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• Josephine Cafmeyer,

  Roles Methodology, Writing – review & editing

  Affiliation Institute of Tropical Medicine, Antwerp, Belgium

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• Marjan Peeters,

  Roles Methodology, Writing – review & editing

  Affiliation Institute of Tropical Medicine, Antwerp, Belgium

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• Esperance Umumararungu,

  Roles Writing – review & editing

  Affiliation Rwanda Biomedical Centre, Kigali, Rwanda

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• Jean Claude S. Ngabonziza,

  Roles Writing – review & editing

  Affiliations Rwanda Biomedical Centre, Kigali, Rwanda, Department of Clinical Biology, University of Rwanda, Kigali, Rwanda

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• Aniceth Rucogoza,

  Roles Writing – review & editing

  Affiliation Rwanda Biomedical Centre, Kigali, Rwanda

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• Olivier Vandenberg,

  Roles Writing – review & editing

  Affiliation Department of Microbiology, Laboratoire Hospitalier Universitaire de Bruxelles (LHUB-ULB), Hôpital Erasme-Cliniques universitaires de Bruxelles, Université Libre de Bruxelles, Brussels, Belgium

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• Delphine Martiny,

  Roles Writing – review & editing

  Affiliations Department of Microbiology, Laboratoire des Hôpitaux Universitaires de Bruxelles – Universitaire Laboratorium Brussel (LHUB-ULB), Brussels, Belgium, National Reference Centre for Campylobacter, CHU Saint-Pierre, Brussels, Belgium, Faculté de Médecine et Pharmacie, Université de Mons (UMONS), Mons, Belgium

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• Angélique Dusabe,

  Roles Investigation, Writing – review & editing

  Affiliation Centre Hospitalier Universtaire de Kigali (CHUK), Kigali, Rwanda

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• Théoneste Nkubana,

  Roles Investigation, Writing – review & editing

  Affiliation Centre Hospitalier Universtaire de Kigali (CHUK), Kigali, Rwanda

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• Gordon Dougan,

  Roles Writing – review & editing

  Affiliation Department of Medicine, Jeffrey Cheah Biomedical Centre, University of Cambridge, Cambridge, United Kingdom

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• Claude Mambo Muvunyi,

  Roles Writing – review & editing

  Affiliation College of Medicine and Health Sciences, University of Rwanda, Kigali, Rwanda

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• Ivan Emil Mwikarago,

  Roles Writing – review & editing

  Affiliation Rwanda Biomedical Centre, Kigali, Rwanda

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• Jan Jacobs,

  Roles Supervision, Writing – review & editing

  Affiliations Institute of Tropical Medicine, Antwerp, Belgium, Department of Microbiology, Immunology and Transplantation, KU Leuven, Leuven, Belgium

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• Stijn Deborggraeve,

  Roles Conceptualization, Methodology, Supervision, Writing – review & editing

  Current address: Médecins Sans Frontières, Access Campaign, Geneva, Switzerland

  Affiliation Institute of Tropical Medicine, Antwerp, Belgium

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•  [ ... ],
• Sandra Van Puyvelde

  Roles Data curation, Formal analysis, Methodology, Software, Writing – review & editing

  Affiliations Institute of Tropical Medicine, Antwerp, Belgium, Department of Medicine, Jeffrey Cheah Biomedical Centre, University of Cambridge, Cambridge, United Kingdom, Wellcome Trust Sanger Institute, Hinxton, United Kingdom, Laboratory of Medical Microbiology, Vaccine & Infectious Disease Institute, University of Antwerp, Antwerp, Belgium

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