Shotgun metagenomics of fecal samples from children in Peru reveals frequent complex co-infections with multiple Campylobacter species

• Craig T. Parker,

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Agricultural Research Service, U.S. Department of Agriculture, Produce Safety and Microbiology Research Unit, Albany, California, United States of America

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• Francesca Schiaffino,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Division of Infectious Diseases, University of Virginia, Charlottesville, Virginia, United States of America, Faculty of Veterinary Medicine, Universidad Peruana Cayetano Heredia, Lima, Peru

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• Steven Huynh,

  Roles Data curation, Investigation, Methodology, Writing – review & editing

  Affiliation Agricultural Research Service, U.S. Department of Agriculture, Produce Safety and Microbiology Research Unit, Albany, California, United States of America

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• Maribel Paredes Olortegui,

  Roles Conceptualization, Data curation, Funding acquisition, Investigation, Methodology, Supervision, Writing – review & editing

  Affiliation Asociacion Benefica Prisma, Iquitos, Peru

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• Pablo Peñataro Yori,

  Roles Data curation, Formal analysis, Funding acquisition, Investigation, Project administration, Supervision, Writing – review & editing

  Affiliations Division of Infectious Diseases, University of Virginia, Charlottesville, Virginia, United States of America, Asociacion Benefica Prisma, Iquitos, Peru

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• Paul F. Garcia Bardales,

  Roles Data curation, Investigation, Writing – review & editing

  Affiliation Asociacion Benefica Prisma, Iquitos, Peru

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• Tackeshy Pinedo Vasquez,

  Roles Data curation, Investigation, Writing – review & editing

  Affiliation Asociacion Benefica Prisma, Iquitos, Peru

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• Greisi E. Curico Huansi,

  Roles Conceptualization, Data curation, Investigation, Writing – review & editing

  Affiliation Asociacion Benefica Prisma, Iquitos, Peru

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• Katia Manzanares Villanueva,

  Roles Data curation, Investigation, Writing – review & editing

  Affiliation Asociacion Benefica Prisma, Iquitos, Peru

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• Wagner V. Shapiama Lopez,

  Roles Data curation, Investigation, Writing – review & editing

  Affiliation Asociacion Benefica Prisma, Iquitos, Peru

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• Kerry K. Cooper ,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Writing – review & editing

  * E-mail: kcooper@arizona.edu (KKC); mkosek@virginia.edu (MNK)

  Affiliation School of Animal and Comparative Biomedical Sciences, University of Arizona, Tucson, Arizona, United States of America

  https://orcid.org/0000-0003-4541-1324

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• Margaret N. Kosek

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: kcooper@arizona.edu (KKC); mkosek@virginia.edu (MNK)

  Affiliations Division of Infectious Diseases, University of Virginia, Charlottesville, Virginia, United States of America, Asociacion Benefica Prisma, Iquitos, Peru

  https://orcid.org/0000-0001-6340-4852

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