Genomic characterization of invasive typhoidal and non-typhoidal Salmonella in southwestern Nigeria

• Odion O. Ikhimiukor,

  Roles Data curation, Formal analysis, Investigation, Methodology, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Global Health Research Unit for the Genomic Surveillance of Antimicrobial Resistance, Department of Pharmaceutical Microbiology, Faculty of Pharmacy, University of Ibadan, Ibadan, Oyo State, Nigeria

  https://orcid.org/0000-0002-3738-4584

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• Anderson O. Oaikhena,

  Roles Formal analysis, Investigation, Methodology, Project administration, Supervision, Validation, Writing – review & editing

  Affiliation Global Health Research Unit for the Genomic Surveillance of Antimicrobial Resistance, Department of Pharmaceutical Microbiology, Faculty of Pharmacy, University of Ibadan, Ibadan, Oyo State, Nigeria

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• Ayorinde O. Afolayan,

  Roles Data curation, Formal analysis, Investigation, Methodology, Supervision, Validation, Writing – review & editing

  Affiliation Global Health Research Unit for the Genomic Surveillance of Antimicrobial Resistance, Department of Pharmaceutical Microbiology, Faculty of Pharmacy, University of Ibadan, Ibadan, Oyo State, Nigeria

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• Abayomi Fadeyi,

  Roles Data curation, Resources, Writing – review & editing

  Affiliation Department of Medical Microbiology and Parasitology, University of Ilorin, Ilorin, Kwara State, Nigeria

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• Aderemi Kehinde,

  Roles Data curation, Project administration, Resources, Writing – review & editing

  Affiliation Department of Medical Microbiology and Parasitology, University College Hospital, Ibadan, Oyo State, Nigeria

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• Veronica O. Ogunleye,

  Roles Data curation, Formal analysis, Investigation, Resources, Validation, Writing – review & editing

  Affiliation Department of Medical Microbiology and Parasitology, University College Hospital, Ibadan, Oyo State, Nigeria

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• Aaron O. Aboderin,

  Roles Data curation, Investigation, Resources, Writing – review & editing

  Affiliation Department of Medical Microbiology and Parasitology, Obafemi Awolowo University Teaching Hospitals Complex, Ile-Ife, Nigeria

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• Oyinlola O. Oduyebo,

  Roles Investigation, Resources, Writing – review & editing

  Affiliation Department of Medical Microbiology and Parasitology, Faculty of Basic Medical Sciences, College of Medicine, University of Lagos, Lagos, Nigeria

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• Charles J. Elikwu,

  Roles Investigation, Resources, Writing – review & editing

  Affiliation Department of Medical Microbiology, School of Basic Clinical Sciences, Benjamin Carson College of Health and Medical Sciences, Babcock University & Teaching Hospital, Ilishan-Remo, Ogun State, Nigeria

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• Erkison Ewomazino Odih,

  Roles Data curation, Formal analysis, Methodology, Software, Writing – review & editing

  Affiliation Global Health Research Unit for the Genomic Surveillance of Antimicrobial Resistance, Department of Pharmaceutical Microbiology, Faculty of Pharmacy, University of Ibadan, Ibadan, Oyo State, Nigeria

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• Ifeoluwa Komolafe,

  Roles Investigation, Writing – review & editing

  Affiliation Global Health Research Unit for the Genomic Surveillance of Antimicrobial Resistance, Department of Pharmaceutical Microbiology, Faculty of Pharmacy, University of Ibadan, Ibadan, Oyo State, Nigeria

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• Silvia Argimón,

  Roles Methodology, Software, Supervision, Writing – review & editing

  Affiliation Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, United Kingdom

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• Abiodun Egwuenu,

  Roles Project administration, Validation, Writing – review & editing

  Affiliation Nigeria Centre for Disease Control, Jabi, Abuja, Nigeria

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• Ini Adebiyi,

  Roles Data curation, Investigation, Resources, Writing – review & editing

  Affiliation Department of Medical Microbiology and Parasitology, University College Hospital, Ibadan, Oyo State, Nigeria

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• Oluwadamilola A. Sadare,

  Roles Investigation, Resources, Writing – review & editing

  Affiliation Department of Medical Microbiology, School of Basic Clinical Sciences, Benjamin Carson College of Health and Medical Sciences, Babcock University & Teaching Hospital, Ilishan-Remo, Ogun State, Nigeria

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• Tochi Okwor,

  Roles Project administration, Supervision, Writing – review & editing

  Affiliation Nigeria Centre for Disease Control, Jabi, Abuja, Nigeria

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• Mihir Kekre,

  Roles Methodology, Supervision, Validation, Writing – review & editing

  Affiliation Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, United Kingdom

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• Anthony Underwood,

  Roles Data curation, Project administration, Software, Supervision, Validation, Writing – review & editing

  Affiliation Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, United Kingdom

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• Chikwe Ihekweazu,

  Roles Conceptualization, Resources, Supervision, Validation, Writing – review & editing

  Affiliation Nigeria Centre for Disease Control, Jabi, Abuja, Nigeria

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• David M. Aanensen,

  Roles Conceptualization, Funding acquisition, Project administration, Resources, Supervision, Writing – review & editing

  Affiliation Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, United Kingdom

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•  [ ... ],
• Iruka N. Okeke

  Roles Conceptualization, Data curation, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Validation, Writing – original draft, Writing – review & editing

  * E-mail: iruka.n.okeke@gmail.com

  Affiliation Global Health Research Unit for the Genomic Surveillance of Antimicrobial Resistance, Department of Pharmaceutical Microbiology, Faculty of Pharmacy, University of Ibadan, Ibadan, Oyo State, Nigeria

  https://orcid.org/0000-0002-1694-7587

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