High prevalence of small intestine bacteria overgrowth and asymptomatic carriage of enteric pathogens in stunted children in Antananarivo, Madagascar

• Jean-Marc Collard ,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Resources, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: jean-marc.collard@pasteur.fr

  Current address: The Center for Microbes, Development and Health (CMDH), Institut Pasteur of Shanghai/Chinese Academy of Sciences, Shanghai, China

  Affiliation Unité de Bactériologie Expérimentale, Institut Pasteur de Madagascar, Antananarivo, Madagascar

  https://orcid.org/0000-0002-1490-3978

  ⨯
• Lova Andrianonimiadana,

  Roles Formal analysis, Methodology, Software, Validation, Visualization, Writing – review & editing

  Affiliation Unité de Bactériologie Expérimentale, Institut Pasteur de Madagascar, Antananarivo, Madagascar

  ⨯
• Azimdine Habib,

  Roles Formal analysis, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Unité de Bactériologie Expérimentale, Institut Pasteur de Madagascar, Antananarivo, Madagascar

  https://orcid.org/0000-0001-9108-9167

  ⨯
• Maheninasy Rakotondrainipiana,

  Roles Data curation, Investigation, Software, Visualization, Writing – review & editing

  Affiliation Unité d’Epidémiologie et de Recherche Clinique, Institut Pasteur de Madagascar, Antananarivo, Madagascar

  https://orcid.org/0000-0001-7932-9703

  ⨯
• Prisca Andriantsalama,

  Roles Data curation, Investigation, Software, Visualization, Writing – review & editing

  Affiliation Unité d’Epidémiologie et de Recherche Clinique, Institut Pasteur de Madagascar, Antananarivo, Madagascar

  ⨯
• Ravaka Randriamparany,

  Roles Data curation, Investigation, Software, Visualization, Writing – review & editing

  Affiliation Unité d’Epidémiologie et de Recherche Clinique, Institut Pasteur de Madagascar, Antananarivo, Madagascar

  https://orcid.org/0000-0003-1942-0884

  ⨯
• M. A. N. Rabenandrasana,

  Roles Formal analysis, Methodology, Software, Validation, Visualization, Writing – review & editing

  Affiliation Unité de Bactériologie Expérimentale, Institut Pasteur de Madagascar, Antananarivo, Madagascar

  ⨯
• François-Xavier Weill,

  Roles Formal analysis, Methodology, Validation, Writing – review & editing

  Affiliation Centre National de Référence des Escherichia coli, Shigella et Salmonella, Unité des Bactéries Pathogènes Entériques, Institut Pasteur, Paris, France

  ⨯
• Nathalie Sauvonnet,

  Roles Formal analysis, Methodology, Validation, Visualization, Writing – review & editing

  Affiliation Unité de Pathogénie Microbienne Moléculaire, Institut Pasteur, Paris, France

  ⨯
• Rindra Vatosoa Randremanana,

  Roles Data curation, Investigation, Software, Visualization, Writing – review & editing

  Affiliation Unité d’Epidémiologie et de Recherche Clinique, Institut Pasteur de Madagascar, Antananarivo, Madagascar

  ⨯
• Vincent Guillemot,

  Roles Conceptualization, Data curation, Formal analysis, Methodology, Software, Validation, Visualization, Writing – review & editing

  Affiliation Hub of Bioinformatics and Biostatistics, Institut Pasteur, Paris, France

  ⨯
• Pascale Vonaesch,

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing – review & editing

  Current address: Department of Fundamental Microbiology, University of Lausanne, Lausanne, Switzerland

  Affiliation Unité de Pathogénie Microbienne Moléculaire, Institut Pasteur, Paris, France

  ⨯
• Philippe J. Sansonetti,

  Roles Conceptualization, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Validation, Writing – review & editing

  Current address: The Center for Microbes, Development and Health (CMDH), Institut Pasteur of Shanghai/Chinese Academy of Sciences, Shanghai, China; Emeritus Professor, Institut Pasteur and Collège de France, Paris, France

  Affiliation Unité de Pathogénie Microbienne Moléculaire, Institut Pasteur, Paris, France

  ⨯
• for the Afribiota Investigators

  ¶The Afribiota Investigators (consortium) are listed in the Acknowledgments

  ⨯