Combining natural language processing and metabarcoding to reveal pathogen-environment associations

• David C. Molik ,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: dmolik@nd.edu

  Affiliations Department of Biological Sciences, University of Notre Dame, Notre Dame, Indiana, United States of America, Navari Center for Digital Scholarship, University of Notre Dame, Notre Dame, Indiana, United States of America

  https://orcid.org/0000-0003-3192-6538

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• DeAndre Tomlinson ,

  Contributed equally to this work with: DeAndre Tomlinson, Shane Davitt

  Roles Data curation, Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Science-Computing Program, University of Notre Dame, Notre Dame, Indiana, United States of America

  https://orcid.org/0000-0003-2333-8242

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• Shane Davitt ,

  Contributed equally to this work with: DeAndre Tomlinson, Shane Davitt

  Roles Data curation, Formal analysis, Investigation, Visualization, Writing – original draft, Writing – review & editing

  Current address: School of Law, University of Texas at Austin, Austin, Texas, United States of America

  Affiliation Department of Biological Sciences, University of Notre Dame, Notre Dame, Indiana, United States of America

  https://orcid.org/0000-0001-9134-835X

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• Eric L. Morgan,

  Roles Methodology, Writing – review & editing

  Affiliation Navari Center for Digital Scholarship, University of Notre Dame, Notre Dame, Indiana, United States of America

  https://orcid.org/0000-0002-9952-7800

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• Matthew Sisk,

  Roles Methodology, Visualization, Writing – review & editing

  Affiliation Navari Center for Digital Scholarship, University of Notre Dame, Notre Dame, Indiana, United States of America

  https://orcid.org/0000-0002-4141-9655

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• Benjamin Roche,

  Roles Conceptualization, Methodology, Writing – review & editing

  Affiliation Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, United States of America

  https://orcid.org/0000-0003-3912-6340

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• Natalie Meyers,

  Roles Data curation, Resources, Supervision, Writing – original draft, Writing – review & editing

  Affiliation Navari Center for Digital Scholarship, University of Notre Dame, Notre Dame, Indiana, United States of America

  https://orcid.org/0000-0001-6441-6716

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• Michael E. Pfrender

  Roles Resources, Supervision, Writing – review & editing

  Affiliation Department of Biological Sciences, University of Notre Dame, Notre Dame, Indiana, United States of America

  https://orcid.org/0000-0001-6861-0655

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