Using affinity propagation clustering for identifying bacterial clades and subclades with whole-genome sequences of Francisella tularensis

Anne Busch; Timo Homeier-Bachmann; Mostafa Y. Abdel-Glil; Anja Hackbart; Helmut Hotzel; Herbert Tomaso

doi:10.1371/journal.pntd.0008018

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Open Access

Peer-reviewed

Research Article

Using affinity propagation clustering for identifying bacterial clades and subclades with whole-genome sequences of Francisella tularensis

Anne Busch ,

Contributed equally to this work with: Anne Busch, Timo Homeier-Bachmann

Roles Conceptualization, Data curation, Formal analysis, Methodology, Software, Supervision, Validation, Visualization, Writing – original draft

* E-mail: anne.busch@fli.de

Affiliation Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Institute of Bacterial Infections and Zoonoses, Friedrich-Loeffler-Institut, Jena, Germany

http://orcid.org/0000-0001-9560-0057

⨯
Timo Homeier-Bachmann ,

Contributed equally to this work with: Anne Busch, Timo Homeier-Bachmann

Roles Conceptualization, Methodology, Software, Writing – original draft, Writing – review & editing

Affiliation Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Institute of Epidemiology, Friedrich-Loeffler-Institut, Greifswald-Insel Riems, Germany
⨯
Mostafa Y. Abdel-Glil,

Roles Formal analysis, Methodology, Writing – review & editing

Affiliation Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Institute of Bacterial Infections and Zoonoses, Friedrich-Loeffler-Institut, Jena, Germany
⨯
Anja Hackbart,

Roles Data curation

Affiliation Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Institute of Bacterial Infections and Zoonoses, Friedrich-Loeffler-Institut, Jena, Germany
⨯
Helmut Hotzel,

Roles Conceptualization, Writing – review & editing

Affiliation Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Institute of Bacterial Infections and Zoonoses, Friedrich-Loeffler-Institut, Jena, Germany
⨯
Herbert Tomaso

Roles Conceptualization, Funding acquisition, Supervision, Writing – review & editing

Affiliation Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Institute of Bacterial Infections and Zoonoses, Friedrich-Loeffler-Institut, Jena, Germany
⨯

Using affinity propagation clustering for identifying bacterial clades and subclades with whole-genome sequences of Francisella tularensis

Anne Busch,
Timo Homeier-Bachmann,
Mostafa Y. Abdel-Glil,
Anja Hackbart,
Helmut Hotzel,
Herbert Tomaso

Published: September 29, 2020
https://doi.org/10.1371/journal.pntd.0008018

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Francisella tularensis
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Single nucleotide polymorphisms
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Phylogenetics
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Antigen-presenting cells
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Genomics
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Sequence alignment
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Phylogenetic analysis
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Clustering algorithms
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