A computational method for the identification of Dengue, Zika and Chikungunya virus species and genotypes

• Vagner Fonseca ,

  Contributed equally to this work with: Vagner Fonseca, Pieter J. K. Libin, Kristof Theys, Luiz C. J. Alcantara, Tulio de Oliveira

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Software, Validation, Writing – original draft, Writing – review & editing

  Affiliations Laboratório de Flavivírus, IOC, Fundação Oswaldo Cruz, Rio de Janeiro, Brazil, KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), College of Health Sciences, University of KwaZuluNatal, Durban, South Africa, Laboratório de Genética Celular e Molecular, ICB, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil

  http://orcid.org/0000-0001-5521-6448

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• Pieter J. K. Libin ,

  Contributed equally to this work with: Vagner Fonseca, Pieter J. K. Libin, Kristof Theys, Luiz C. J. Alcantara, Tulio de Oliveira

  Roles Data curation, Formal analysis, Investigation, Validation

  Affiliations Artificial Intelligence Lab, Department of Computer Science, Vrije Universiteit Brussel, Brussels, Belgium, KU Leuven—University of Leuven, Department of Microbiology and Immunology, Rega Institute for Medical Research, Clinical and Epidemiological Virology, Leuven, Belgium

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• Kristof Theys ,

  Contributed equally to this work with: Vagner Fonseca, Pieter J. K. Libin, Kristof Theys, Luiz C. J. Alcantara, Tulio de Oliveira

  Roles Formal analysis, Software, Validation

  Affiliation KU Leuven—University of Leuven, Department of Microbiology and Immunology, Rega Institute for Medical Research, Clinical and Epidemiological Virology, Leuven, Belgium

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• Nuno R. Faria,

  Roles Writing – original draft, Writing – review & editing

  Affiliation Department of Zoology, University of Oxford, Oxford, United Kingdom

  http://orcid.org/0000-0001-8839-2798

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• Marcio R. T. Nunes,

  Roles Writing – original draft, Writing – review & editing

  Affiliation Evandro Chagas Institute, Ministry of Health, Ananindeua, Brazil

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• Maria I. Restovic,

  Roles Formal analysis, Methodology, Software, Validation

  Affiliation Laboratório de Patologia Experimental, Fundação Oswaldo Cruz, Salvador, Brazil

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• Murilo Freire,

  Roles Formal analysis, Methodology, Software, Validation

  Affiliation Laboratório de Patologia Experimental, Fundação Oswaldo Cruz, Salvador, Brazil

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• Marta Giovanetti,

  Roles Writing – original draft, Writing – review & editing

  Affiliation Laboratório de Flavivírus, IOC, Fundação Oswaldo Cruz, Rio de Janeiro, Brazil

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• Lize Cuypers,

  Roles Data curation, Formal analysis, Investigation, Validation

  Affiliation KU Leuven—University of Leuven, Department of Microbiology and Immunology, Rega Institute for Medical Research, Clinical and Epidemiological Virology, Leuven, Belgium

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• Ann Nowé,

  Roles Writing – original draft, Writing – review & editing

  Affiliation Artificial Intelligence Lab, Department of Computer Science, Vrije Universiteit Brussel, Brussels, Belgium

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• Ana Abecasis,

  Roles Writing – original draft, Writing – review & editing

  Affiliation Center for Global Health and Tropical Medicine, Unidade de Microbiologia, Instituto de Higiene e Medicina Tropical, Universidade Nova de Lisboa, Lisbon, Portugal

  http://orcid.org/0000-0002-3903-5265

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• Koen Deforche,

  Roles Software, Validation, Writing – original draft, Writing – review & editing

  Affiliation EMWEB (private company), Herent, Belgium

  http://orcid.org/0000-0003-3898-9494

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• Gilberto A. Santiago,

  Roles Writing – original draft, Writing – review & editing

  Affiliation Division of Vector-Borne Diseases, Centers for Disease Control and Prevention, San Juan, Puerto Rico, United states of America

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• Isadora C. de Siqueira,

  Roles Writing – original draft, Writing – review & editing

  Affiliation Laboratório de Patologia Experimental, Fundação Oswaldo Cruz, Salvador, Brazil

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• Emmanuel J. San,

  Roles Software, Writing – review & editing

  Affiliation KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), College of Health Sciences, University of KwaZuluNatal, Durban, South Africa

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• Kaliane C. B. Machado,

  Roles Software

  Affiliation Laboratório de Patologia Experimental, Fundação Oswaldo Cruz, Salvador, Brazil

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• Vasco Azevedo,

  Roles Writing – original draft, Writing – review & editing

  Affiliation Laboratório de Genética Celular e Molecular, ICB, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil

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• Ana Maria Bispo-de Filippis,

  Roles Writing – original draft, Writing – review & editing

  Affiliation Laboratório de Flavivírus, IOC, Fundação Oswaldo Cruz, Rio de Janeiro, Brazil

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• Rivaldo Venâncio da Cunha,

  Roles Writing – original draft, Writing – review & editing

  Affiliation Coordenação de Vigilância em Saúde e Laboratórios de Referências, Fundação Oswaldo Cruz, Rio de Janeiro, Brazil

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• Oliver G. Pybus,

  Roles Writing – original draft, Writing – review & editing

  Affiliation Department of Zoology, University of Oxford, Oxford, United Kingdom

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• Anne-Mieke Vandamme,

  Roles Validation, Writing – original draft, Writing – review & editing

  Affiliations KU Leuven—University of Leuven, Department of Microbiology and Immunology, Rega Institute for Medical Research, Clinical and Epidemiological Virology, Leuven, Belgium, Center for Global Health and Tropical Medicine, Unidade de Microbiologia, Instituto de Higiene e Medicina Tropical, Universidade Nova de Lisboa, Lisbon, Portugal

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• Luiz C. J. Alcantara ,

  Contributed equally to this work with: Vagner Fonseca, Pieter J. K. Libin, Kristof Theys, Luiz C. J. Alcantara, Tulio de Oliveira

  Roles Funding acquisition, Project administration, Resources, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: alcantaraluiz42@gmail.com (LCJA); tuliodna@gmail.com (TDO)

  Affiliations Laboratório de Flavivírus, IOC, Fundação Oswaldo Cruz, Rio de Janeiro, Brazil, Laboratório de Genética Celular e Molecular, ICB, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil

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•  [ ... ],
• Tulio de Oliveira

  Contributed equally to this work with: Vagner Fonseca, Pieter J. K. Libin, Kristof Theys, Luiz C. J. Alcantara, Tulio de Oliveira

  Roles Funding acquisition, Project administration, Resources, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: alcantaraluiz42@gmail.com (LCJA); tuliodna@gmail.com (TDO)

  Affiliation KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), College of Health Sciences, University of KwaZuluNatal, Durban, South Africa

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