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Open Access
Peer-reviewed
Research Article
Genomic, epidemiological and digital surveillance of Chikungunya virus in the Brazilian Amazon
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Felipe Gomes Naveca,
Roles Data curation, Funding acquisition, Investigation, Project administration, Supervision, Writing – original draft, Writing – review & editing
Affiliation Laboratório de Ecologia de Doenças Transmissíveis na Amazônia, Instituto Leônidas e Maria Deane, FIOCRUZ, Manaus, Brazil
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Ingra Claro,
Roles Data curation, Formal analysis, Investigation, Supervision, Writing – review & editing
Affiliation Instituto de Medicina Tropical e Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil
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Marta Giovanetti,
Roles Data curation, Formal analysis, Investigation, Supervision
Affiliations Laboratório de Flavivírus, Instituto Oswaldo Cruz, FIOCRUZ, Rio de Janeiro, Brazil, Laboratório de Genética Celular e Molecular, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
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Jaqueline Goes de Jesus,
Roles Data curation, Formal analysis, Methodology, Supervision
Affiliations Laboratório de Flavivírus, Instituto Oswaldo Cruz, FIOCRUZ, Rio de Janeiro, Brazil, Laboratório de Patologia Experimental, Instituto Gonçalo Moniz, Fundação Oswaldo Cruz, Salvador, Bahia, Brazil
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Joilson Xavier,
Roles Formal analysis, Investigation, Methodology
Affiliations Laboratório de Flavivírus, Instituto Oswaldo Cruz, FIOCRUZ, Rio de Janeiro, Brazil, Laboratório de Patologia Experimental, Instituto Gonçalo Moniz, Fundação Oswaldo Cruz, Salvador, Bahia, Brazil
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Felipe Campos de Melo Iani,
Roles Formal analysis, Investigation, Methodology
Affiliations Laboratório de Genética Celular e Molecular, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil, Laboratório Central de Saúde Pública, Instituto Octávio Magalhães, FUNED, Belo Horizonte, Minas Gerais, Brazil
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Valdinete Alves do Nascimento,
Roles Investigation, Project administration, Resources, Validation
Affiliation Laboratório de Ecologia de Doenças Transmissíveis na Amazônia, Instituto Leônidas e Maria Deane, FIOCRUZ, Manaus, Brazil
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Victor Costa de Souza,
Roles Data curation, Investigation, Methodology, Validation
Affiliation Laboratório de Ecologia de Doenças Transmissíveis na Amazônia, Instituto Leônidas e Maria Deane, FIOCRUZ, Manaus, Brazil
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Paola Paz Silveira,
Roles Formal analysis, Investigation, Methodology
Affiliation Laboratório de Virologia Molecular, Departamento de Genética, Instituto de Biologia, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil
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José Lourenço,
Roles Formal analysis, Investigation, Writing – review & editing
Affiliation Department of Zoology, University of Oxford, South Parks Road, Oxford, United Kingdom
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Mauricio Santillana,
Roles Formal analysis, Methodology, Validation, Writing – review & editing
Affiliations Harvard Medical School, Department of Pediatrics, Boston, MA, United States of America, Computational Health Informatics Program, Boston Children’s Hospital, Boston, MA, United States of America
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Moritz U. G. Kraemer,
Roles Investigation, Validation, Writing – review & editing
Affiliations Department of Zoology, University of Oxford, South Parks Road, Oxford, United Kingdom, Computational Epidemiology Lab, Boston Children’s Hospital, Boston, MA, United States of America
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Josh Quick,
Roles Investigation, Methodology
Affiliation Institute of Microbiology and Infection, University of Birmingham, Birmingham, United Kingdom
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Sarah C. Hill,
Roles Conceptualization, Methodology, Project administration, Writing – review & editing
Affiliation Department of Zoology, University of Oxford, South Parks Road, Oxford, United Kingdom
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Julien Thézé,
Roles Data curation, Formal analysis, Methodology, Validation
Affiliation Department of Zoology, University of Oxford, South Parks Road, Oxford, United Kingdom
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Rodrigo Dias de Oliveira Carvalho,
Roles Formal analysis, Investigation
Affiliation Laboratório de Genética Celular e Molecular, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
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Vasco Azevedo,
Roles Conceptualization, Writing – review & editing
Affiliation Laboratório de Genética Celular e Molecular, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
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Flavia Cristina da Silva Salles,
Roles Data curation, Methodology, Validation
Affiliation Instituto de Medicina Tropical e Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil
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Márcio Roberto Teixeira Nunes,
Roles Conceptualization, Investigation, Writing – review & editing
Affiliation Evandro Chagas Institute, Brazilian Ministry of Health, Ananindeua, Brazil
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Poliana da Silva Lemos,
Roles Conceptualization, Investigation, Writing – review & editing
Affiliation Evandro Chagas Institute, Brazilian Ministry of Health, Ananindeua, Brazil
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Darlan da Silva Candido,
Roles Formal analysis, Investigation, Writing – review & editing
Affiliation Department of Zoology, University of Oxford, South Parks Road, Oxford, United Kingdom
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Glauco de Carvalho Pereira,
Roles Supervision, Writing – review & editing
Affiliation Laboratório de Genética Celular e Molecular, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
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Marluce Aparecida Assunção Oliveira,
Roles Supervision
Affiliation Laboratório de Genética Celular e Molecular, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
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Cátia Alexandra Ribeiro Meneses,
Roles Data curation, Investigation, Writing – review & editing
Affiliation Laboratório Central de Saúde Pública, Boa Vista, Roraima, Brazil
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Rodrigo Melo Maito,
Roles Data curation, Investigation, Writing – review & editing
Affiliation Laboratório Central de Saúde Pública, Boa Vista, Roraima, Brazil
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Claudeth Rocha Santa Brígida Cunha,
Roles Data curation, Investigation, Writing – review & editing
Affiliation Laboratório Central de Saúde Pública, Boa Vista, Roraima, Brazil
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Daniela Palha de Sousa Campos,
Roles Data curation, Investigation, Writing – review & editing
Affiliation Superintendência de Vigilância em Saúde, Secretaria Municipal de Saúde de Boa Vista, Roraima, Brazil
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Marcia da Costa Castilho,
Roles Data curation, Investigation, Writing – review & editing
Affiliation Departamento de Virologia, Fundação de Medicina Tropical Doutor Heitor Vieira Dourado, Manaus, Amazonas, Brazil
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Thalita Caroline da Silva Siqueira,
Roles Investigation, Writing – review & editing
Affiliation Superintendência de Vigilância em Saúde, Secretaria Municipal de Saúde de Boa Vista, Roraima, Brazil
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Tiza Matos Terra,
Roles Investigation, Writing – review & editing
Affiliation Laboratório Central de Saúde Pública do Amazonas, Manaus, Amazonas, Brazil
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Carlos F. Campelo de Albuquerque,
Roles Conceptualization, Investigation, Writing – review & editing
Affiliation Organização Pan—Americana da Saúde/Organização Mundial da Saúde—(OPAS/OMS), Brasília-DF, Brazil
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Laura Nogueira da Cruz,
Roles Data curation, Writing – review & editing
Affiliation Secretaria de Vigilância em Saúde, Ministério da Saúde (SVS/MS), Brasília-DF, Brazil
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André Luis de Abreu,
Roles Data curation, Writing – review & editing
Affiliation Secretaria de Vigilância em Saúde, Ministério da Saúde (SVS/MS), Brasília-DF, Brazil
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Divino Valerio Martins,
Roles Data curation, Writing – review & editing
Affiliation Secretaria de Vigilância em Saúde, Ministério da Saúde (SVS/MS), Brasília-DF, Brazil
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Daniele Silva de Moraes Vanlume Simoes,
Roles Data curation, Writing – review & editing
Affiliation Secretaria de Vigilância em Saúde, Ministério da Saúde (SVS/MS), Brasília-DF, Brazil
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Renato Santana de Aguiar,
Roles Methodology, Writing – review & editing
Affiliation Laboratório de Virologia Molecular, Departamento de Genética, Instituto de Biologia, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil
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Sérgio Luiz Bessa Luz,
Roles Project administration, Writing – review & editing
Affiliation Laboratório de Ecologia de Doenças Transmissíveis na Amazônia, Instituto Leônidas e Maria Deane, FIOCRUZ, Manaus, Brazil
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Nicholas Loman,
Roles Methodology, Writing – review & editing
Affiliation Institute of Microbiology and Infection, University of Birmingham, Birmingham, United Kingdom
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Oliver G. Pybus,
Roles Conceptualization, Supervision, Writing – review & editing
Affiliation Department of Zoology, University of Oxford, South Parks Road, Oxford, United Kingdom
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Ester C. Sabino,
Roles Conceptualization, Supervision, Writing – review & editing
Affiliation Instituto de Medicina Tropical e Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil
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Osnei Okumoto,
Roles Conceptualization, Supervision, Writing – review & editing
Affiliation Secretaria de Vigilância em Saúde, Ministério da Saúde (SVS/MS), Brasília-DF, Brazil
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Luiz Carlos Junior Alcantara ,
Roles Conceptualization, Data curation, Funding acquisition, Investigation, Project administration, Resources, Supervision, Writing – original draft, Writing – review & editing
* E-mail: luiz.alcantara@ioc.fiocruz.br (LCJA); nuno.faria@zoo.ox.ac.uk (NRF)
Affiliations Laboratório de Flavivírus, Instituto Oswaldo Cruz, FIOCRUZ, Rio de Janeiro, Brazil, Laboratório de Genética Celular e Molecular, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
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Nuno Rodrigues Faria
Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Resources, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing
* E-mail: luiz.alcantara@ioc.fiocruz.br (LCJA); nuno.faria@zoo.ox.ac.uk (NRF)
Affiliation Department of Zoology, University of Oxford, South Parks Road, Oxford, United Kingdom
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Genomic, epidemiological and digital surveillance of Chikungunya virus in the Brazilian Amazon
- Felipe Gomes Naveca,
- Ingra Claro,
- Marta Giovanetti,
- Jaqueline Goes de Jesus,
- Joilson Xavier,
- Felipe Campos de Melo Iani,
- Valdinete Alves do Nascimento,
- Victor Costa de Souza,
- Paola Paz Silveira,
- José Lourenço
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- Published: March 7, 2019
- https://doi.org/10.1371/journal.pntd.0007065