Evolution and spread of Venezuelan equine encephalitis complex alphavirus in the Americas

• Naomi L. Forrester ,

  Contributed equally to this work with: Naomi L. Forrester, Joel O. Wertheim

  Roles Conceptualization, Investigation, Methodology, Writing – original draft, Writing – review & editing

  * E-mail: naforres@utmb.edu

  Affiliation Institute for Human Infections and Immunity, Department of Pathology and Department of Microbiology and Immunology, University of Texas Medical Branch, Galveston, Texas, United States of America

  http://orcid.org/0000-0001-8892-5216

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• Joel O. Wertheim ,

  Contributed equally to this work with: Naomi L. Forrester, Joel O. Wertheim

  Roles Conceptualization, Investigation, Methodology, Writing – original draft, Writing – review & editing

  Affiliation Department of Medicine, University of California, San Diego, La Jolla, California, United States of America

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• Vivian G. Dugan,

  Roles Funding acquisition, Investigation, Methodology, Project administration

  Current address: Virology Surveillance and Diagnosis Branch Influenza Division, Centers for Disease Control, Atlanta, Georgia, United States of America

  Affiliation Virology Group J. Craig Venter Institute, Rockville, Maryland, United States of America

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• Albert J. Auguste,

  Roles Investigation, Writing – original draft, Writing – review & editing

  Affiliation Institute for Human Infections and Immunity, Department of Pathology and Department of Microbiology and Immunology, University of Texas Medical Branch, Galveston, Texas, United States of America

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• David Lin,

  Roles Formal analysis, Investigation

  Affiliation cBio, Fremont, California, United States of America

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• A. Paige Adams,

  Roles Investigation

  Current address: International Animal Health and Food Safety Institute, Kansas State University Olathe, Olathe, Kansas, United States of America

  Affiliation Institute for Human Infections and Immunity, Department of Pathology and Department of Microbiology and Immunology, University of Texas Medical Branch, Galveston, Texas, United States of America

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• Rubing Chen,

  Roles Investigation

  Affiliation Institute for Human Infections and Immunity, Department of Pathology and Department of Microbiology and Immunology, University of Texas Medical Branch, Galveston, Texas, United States of America

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• Rodion Gorchakov,

  Roles Investigation

  Current address: Department of Pediatrics, Section of Tropical Medicine, Baylor College of Medicine, Houston, Texas, United States of America

  Affiliation Institute for Human Infections and Immunity, Department of Pathology and Department of Microbiology and Immunology, University of Texas Medical Branch, Galveston, Texas, United States of America

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• Grace Leal,

  Roles Investigation

  Affiliation Institute for Human Infections and Immunity, Department of Pathology and Department of Microbiology and Immunology, University of Texas Medical Branch, Galveston, Texas, United States of America

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• Jose G. Estrada-Franco,

  Roles Resources

  Current address: The College of the Southern Border (EcoSur), San Cristobal de las Casas, Chiapas, Mexico; Unidad San Cristóbal de Las Casas, Departamento de Salud, Periférico Sur s/n, María Auxiliadora, San Cristóbal de Las Casas, Mexico; Centers for Disease Control and Prevention CDC/National Center for Emerging Zoonotic Infectious Diseases (NCEZID)/Office of Infectious Diseases (OID), Edinburg, Texas, United States of America

  Affiliation Institute for Human Infections and Immunity, Department of Pathology and Department of Microbiology and Immunology, University of Texas Medical Branch, Galveston, Texas, United States of America

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• Jyotsna Pandya,

  Roles Investigation

  Affiliation Institute for Human Infections and Immunity, Department of Pathology and Department of Microbiology and Immunology, University of Texas Medical Branch, Galveston, Texas, United States of America

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• Rebecca A. Halpin,

  Roles Investigation

  Affiliation Virology Group J. Craig Venter Institute, Rockville, Maryland, United States of America

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• Kumar Hari,

  Roles Formal analysis, Investigation

  Affiliation cBio, Fremont, California, United States of America

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• Ravi Jain,

  Roles Formal analysis, Investigation

  Affiliation cBio, Fremont, California, United States of America

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• Timothy B. Stockwell,

  Roles Formal analysis, Investigation

  Current address: National Biodefense Analysis and Countermeasures Center, Fort Detrick, Maryland, United States of America

  Affiliation Informatics Group, J. Craig Venter Institute, Rockville, Maryland, United States of America

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• Suman R. Das,

  Roles Data curation

  Current address: Department of Medicine, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America

  Affiliation Informatics Group, J. Craig Venter Institute, Rockville, Maryland, United States of America

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• David E. Wentworth,

  Roles Formal analysis, Investigation, Writing – review & editing

  Current address: Virology Surveillance and Diagnosis Branch Influenza Division, Centers for Disease Control, Atlanta, Georgia, United States of America

  Affiliation Virology Group J. Craig Venter Institute, Rockville, Maryland, United States of America

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• Martin D. Smith,

  Roles Conceptualization, Formal analysis, Investigation

  Current address: Pacific Biosciences, Menlo Park, California, United States of America

  Affiliation Bioinformatics and Systems Biology Graduate Program, University of California, San Diego, La Jolla, California, United States of America

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• Sergei L. Kosakovsky Pond,

  Roles Conceptualization, Formal analysis, Investigation

  Current address: Department of Biology, Temple University, Philadelphia, Pennsylvania, United States of America

  Affiliation Department of Medicine, University of California, San Diego, La Jolla, California, United States of America

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•  [ ... ],
• Scott C. Weaver

  Roles Conceptualization, Funding acquisition, Investigation, Methodology, Project administration, Writing – original draft, Writing – review & editing

  Affiliation Institute for Human Infections and Immunity, Department of Pathology and Department of Microbiology and Immunology, University of Texas Medical Branch, Galveston, Texas, United States of America

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