A Comparison between Transcriptome Sequencing and 16S Metagenomics for Detection of Bacterial Pathogens in Wildlife

• Maria Razzauti,

  Affiliation INRA, UMR CBGP (INRA / IRD / Cirad / Montpellier SupAgro), Montpellier, France

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• Maxime Galan,

  Affiliation INRA, UMR CBGP (INRA / IRD / Cirad / Montpellier SupAgro), Montpellier, France

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• Maria Bernard,

  Affiliation INRA, GABI, Domaine de Vilvert, Jouy-en-Josas, France

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• Sarah Maman,

  Affiliation INRA, Sigenae Group, GenPhySE, INRA Auzeville, Castanet Tolosan, France

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• Christophe Klopp,

  Affiliation INRA, Sigenae Group, GenPhySE, INRA Auzeville, Castanet Tolosan, France

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• Nathalie Charbonnel,

  Affiliation INRA, UMR CBGP (INRA / IRD / Cirad / Montpellier SupAgro), Montpellier, France

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• Muriel Vayssier-Taussat,

  Affiliation INRA, UMR Bipar, ENVA, ANSES, USC INRA, Maisons-Alfort, France

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• Marc Eloit,

  Affiliations PathoQuest SAS, Paris, France, Ecole Nationale Vétérinaire d’Alfort, UMR 1161, Virologie ENVA, ANSES, INRA, Maisons-Alfort, France, Pasteur Institute, Laboratory of Pathogen Discovery, Biology of Infection Unit, Inserm U1117, Paris, France

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• Jean-François Cosson

  * E-mail: cosson@supagro.inra.fr

  Affiliation INRA, UMR CBGP (INRA / IRD / Cirad / Montpellier SupAgro), Montpellier, France

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