About the Authors

Kathryn Winglee

Contributed equally to this work with: Kathryn Winglee, Abigail Manson McGuire

Affiliation Center for Tuberculosis Research, Department of Medicine, Johns Hopkins University, Baltimore, Maryland, United States of America

Abigail Manson McGuire

Contributed equally to this work with: Kathryn Winglee, Abigail Manson McGuire

Affiliation Genome Sequencing and Analysis Program, The Broad Institute of MIT & Harvard, Cambridge, Massachusetts, United States of America

Mamoudou Maiga

Current address: National Institute of Health, Bethesda, Maryland, United States of America

Affiliations Center for Tuberculosis Research, Department of Medicine, Johns Hopkins University, Baltimore, Maryland, United States of America, Project SEREFO (Centre de Recherche et de Formation sur le VIH/Sida et la Tuberculose)/University of Sciences, Technics and Technologies of Bamako (USTTB), Bamako, Mali

Thomas Abeel

Affiliations Genome Sequencing and Analysis Program, The Broad Institute of MIT & Harvard, Cambridge, Massachusetts, United States of America, Delft Bioinformatics Lab, Delft University of Technology, Delft, The Netherlands

Terrance Shea

Affiliation Genome Sequencing and Analysis Program, The Broad Institute of MIT & Harvard, Cambridge, Massachusetts, United States of America

Christopher A. Desjardins

Affiliation Genome Sequencing and Analysis Program, The Broad Institute of MIT & Harvard, Cambridge, Massachusetts, United States of America

Bassirou Diarra

Affiliation Project SEREFO (Centre de Recherche et de Formation sur le VIH/Sida et la Tuberculose)/University of Sciences, Technics and Technologies of Bamako (USTTB), Bamako, Mali

Bocar Baya

Affiliation Project SEREFO (Centre de Recherche et de Formation sur le VIH/Sida et la Tuberculose)/University of Sciences, Technics and Technologies of Bamako (USTTB), Bamako, Mali

Moumine Sanogo

Affiliation Project SEREFO (Centre de Recherche et de Formation sur le VIH/Sida et la Tuberculose)/University of Sciences, Technics and Technologies of Bamako (USTTB), Bamako, Mali

Souleymane Diallo

Affiliation Project SEREFO (Centre de Recherche et de Formation sur le VIH/Sida et la Tuberculose)/University of Sciences, Technics and Technologies of Bamako (USTTB), Bamako, Mali

Ashlee M. Earl

aearl@broadinstitute.org (AME); wbishai1@jhmi.edu (WRB)

Affiliation Genome Sequencing and Analysis Program, The Broad Institute of MIT & Harvard, Cambridge, Massachusetts, United States of America

William R. Bishai

aearl@broadinstitute.org (AME); wbishai1@jhmi.edu (WRB)

Affiliation Center for Tuberculosis Research, Department of Medicine, Johns Hopkins University, Baltimore, Maryland, United States of America

Competing Interests

The authors have declared that no competing interests exist.

Author Contributions

Conceived and designed the experiments: KW MM WRB. Performed the experiments: KW MM BD BB MS SD. Analyzed the data: KW AMM TA TS CAD. Contributed reagents/materials/analysis tools: AME WRB. Wrote the paper: KW AMM AME.