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Web-based applications

LipidHome: A Database of Theoretical Lipids Optimized for High Throughput Mass Spectrometry Lipidomics

Joseph M. Foster, Pablo Moreno, Antonio Fabregat, Henning Hermjakob, Christoph Steinbeck, Rolf Apweiler, Michael J. O. Wakelam, Juan Antonio Vizcaíno

published 07 May 2013

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Comparative GO: A Web Application for Comparative Gene Ontology and Gene Ontology-Based Gene Selection in Bacteria

Mario Fruzangohar, Esmaeil Ebrahimie, Abiodun D. Ogunniyi, Layla K. Mahdi, James C. Paton, David L. Adelson

published 11 Mar 2013

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canEvolve: A Web Portal for Integrative Oncogenomics

Mehmet Kemal Samur, Zhenyu Yan, Xujun Wang, Qingyi Cao, Nikhil C. Munshi, Cheng Li, Parantu K. Shah

published 13 Feb 2013

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ResA³: A Web Tool for Resampling Analysis of Arbitrary Annotations

Aaron Ruhs, Franz Cemic, Thomas Braun, Marcus Krüger

published 28 Jan 2013

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Cutoff Finder: A Comprehensive and Straightforward Web Application Enabling Rapid Biomarker Cutoff Optimization

Jan Budczies, Frederick Klauschen, Bruno V. Sinn, Balázs Győrffy, Wolfgang D. Schmitt, Silvia Darb-Esfahani, Carsten Denkert

published 14 Dec 2012

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A Partition Function Approximation Using Elementary Symmetric Functions

Ramu Anandakrishnan

published 12 Dec 2012

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A Framework for Annotating Human Genome in Disease Context

Wei Xu, Huisong Wang, Wenqing Cheng, Dong Fu, Tian Xia, Warren A. Kibbe, Simon M. Lin

published 10 Dec 2012

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miRandola: Extracellular Circulating MicroRNAs Database

Francesco Russo, Sebastiano Di Bella, Giovanni Nigita, Valentina Macca, Alessandro Laganà, Rosalba Giugno, Alfredo Pulvirenti, Alfredo Ferro

published 19 Oct 2012

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TRIP Database 2.0: A Manually Curated Information Hub for Accessing TRP Channel Interaction Network

Young-Cheul Shin, Soo-Yong Shin, Jung Nyeo Chun, Hyeon Sung Cho, Jin Muk Lim, Hong-Gee Kim, Insuk So, Dongseop Kwon, Ju-Hong Jeon

published 11 Oct 2012

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BioFET-SIM Web Interface: Implementation and Two Applications

Martin R. Hediger, Jan H. Jensen, Luca De Vico

published 08 Oct 2012

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A Public HTLV-1 Molecular Epidemiology Database for Sequence Management and Data Mining

Thessika Hialla Almeida Araujo, Leandro Inacio Souza-Brito, Pieter Libin, Koen Deforche, Dustin Edwards, Antonio Eduardo de Albuquerque-Junior, Anne-Mieke Vandamme, Bernardo Galvao-Castro, Luiz Carlos Junior Alcantara

published 10 Sep 2012

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CLEARPOND: Cross-Linguistic Easy-Access Resource for Phonological and Orthographic Neighborhood Densities

Viorica Marian, James Bartolotti, Sarah Chabal, Anthony Shook

published 20 Aug 2012

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Gene Expression Commons: An Open Platform for Absolute Gene Expression Profiling

Jun Seita, Debashis Sahoo, Derrick J. Rossi, Deepta Bhattacharya, Thomas Serwold, Matthew A. Inlay, Lauren I. R. Ehrlich, John W. Fathman, David L. Dill, Irving L. Weissman

published 18 Jul 2012

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