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Web-based applications

RMOD: A Tool for Regulatory Motif Detection in Signaling Network

Jinki Kim, Gwan-Su Yi

published 12 Jul 2013

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LAMP: A Database Linking Antimicrobial Peptides

Xiaowei Zhao, Hongyu Wu, Hairong Lu, Guodong Li, Qingshan Huang

published 18 Jun 2013

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Serverification of Molecular Modeling Applications: The Rosetta Online Server That Includes Everyone (ROSIE)

Sergey Lyskov, Fang-Chieh Chou, Shane Ó. Conchúir, Bryan S. Der, Kevin Drew, Daisuke Kuroda, Jianqing Xu, Brian D. Weitzner, P. Douglas Renfrew, Parin Sripakdeevong, Benjamin Borgo, James J. Havranek, Brian Kuhlman, Tanja Kortemme, Richard Bonneau, Jeffrey J. Gray, Rhiju Das

published 22 May 2013

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ExtremeDB: A Unified Web Repository of Extremophilic Archaea and Bacteria

Manash Chandra Majhi, Abhisek Kumar Behera, Niha Mohan Kulshreshtha, Dr. Mahmooduzafar, Rita Kumar, Anil Kumar

published 16 May 2013

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LipidHome: A Database of Theoretical Lipids Optimized for High Throughput Mass Spectrometry Lipidomics

Joseph M. Foster, Pablo Moreno, Antonio Fabregat, Henning Hermjakob, Christoph Steinbeck, Rolf Apweiler, Michael J. O. Wakelam, Juan Antonio Vizcaíno

published 07 May 2013

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Comparative GO: A Web Application for Comparative Gene Ontology and Gene Ontology-Based Gene Selection in Bacteria

Mario Fruzangohar, Esmaeil Ebrahimie, Abiodun D. Ogunniyi, Layla K. Mahdi, James C. Paton, David L. Adelson

published 11 Mar 2013

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canEvolve: A Web Portal for Integrative Oncogenomics

Mehmet Kemal Samur, Zhenyu Yan, Xujun Wang, Qingyi Cao, Nikhil C. Munshi, Cheng Li, Parantu K. Shah

published 13 Feb 2013

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ResA³: A Web Tool for Resampling Analysis of Arbitrary Annotations

Aaron Ruhs, Franz Cemic, Thomas Braun, Marcus Krüger

published 28 Jan 2013

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Cutoff Finder: A Comprehensive and Straightforward Web Application Enabling Rapid Biomarker Cutoff Optimization

Jan Budczies, Frederick Klauschen, Bruno V. Sinn, Balázs Győrffy, Wolfgang D. Schmitt, Silvia Darb-Esfahani, Carsten Denkert

published 14 Dec 2012

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A Partition Function Approximation Using Elementary Symmetric Functions

Ramu Anandakrishnan

published 12 Dec 2012

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A Framework for Annotating Human Genome in Disease Context

Wei Xu, Huisong Wang, Wenqing Cheng, Dong Fu, Tian Xia, Warren A. Kibbe, Simon M. Lin

published 10 Dec 2012

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miRandola: Extracellular Circulating MicroRNAs Database

Francesco Russo, Sebastiano Di Bella, Giovanni Nigita, Valentina Macca, Alessandro Laganà, Rosalba Giugno, Alfredo Pulvirenti, Alfredo Ferro

published 19 Oct 2012

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TRIP Database 2.0: A Manually Curated Information Hub for Accessing TRP Channel Interaction Network

Young-Cheul Shin, Soo-Yong Shin, Jung Nyeo Chun, Hyeon Sung Cho, Jin Muk Lim, Hong-Gee Kim, Insuk So, Dongseop Kwon, Ju-Hong Jeon

published 11 Oct 2012

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