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Web-based applications

SurvExpress: An Online Biomarker Validation Tool and Database for Cancer Gene Expression Data Using Survival Analysis

Raul Aguirre-Gamboa, Hugo Gomez-Rueda, [ ... ], Victor Treviño

GobyWeb: Simplified Management and Analysis of Gene Expression and DNA Methylation Sequencing Data

Kevin C. Dorff, Nyasha Chambwe, [ ... ], Fabien Campagne

Simplified Method for Predicting a Functional Class of Proteins in Transcription Factor Complexes

Marek J. Piatek, Michael C. Schramm, [ ... ], Vladimir B. Bajic

RMOD: A Tool for Regulatory Motif Detection in Signaling Network

Jinki Kim, Gwan-Su Yi

LAMP: A Database Linking Antimicrobial Peptides

Xiaowei Zhao, Hongyu Wu, [ ... ], Qingshan Huang

Serverification of Molecular Modeling Applications: The Rosetta Online Server That Includes Everyone (ROSIE)

Sergey Lyskov, Fang-Chieh Chou, [ ... ], Rhiju Das

ExtremeDB: A Unified Web Repository of Extremophilic Archaea and Bacteria

Manash Chandra Majhi, Abhisek Kumar Behera, [ ... ], Anil Kumar

LipidHome: A Database of Theoretical Lipids Optimized for High Throughput Mass Spectrometry Lipidomics

Joseph M. Foster, Pablo Moreno, [ ... ], Juan Antonio Vizcaíno

Comparative GO: A Web Application for Comparative Gene Ontology and Gene Ontology-Based Gene Selection in Bacteria

Mario Fruzangohar, Esmaeil Ebrahimie, [ ... ], David L. Adelson

canEvolve: A Web Portal for Integrative Oncogenomics

Mehmet Kemal Samur, Zhenyu Yan, [ ... ], Parantu K. Shah

ResA³: A Web Tool for Resampling Analysis of Arbitrary Annotations

Aaron Ruhs, Franz Cemic, Thomas Braun, Marcus Krüger

Cutoff Finder: A Comprehensive and Straightforward Web Application Enabling Rapid Biomarker Cutoff Optimization

Jan Budczies, Frederick Klauschen, [ ... ], Carsten Denkert

A Partition Function Approximation Using Elementary Symmetric Functions

Ramu Anandakrishnan

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