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Web-based applications

STEME: A Robust, Accurate Motif Finder for Large Data Sets

John E. Reid, Lorenz Wernisch

published 13 Mar 2014

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LAceP: Lysine Acetylation Site Prediction Using Logistic Regression Classifiers

Ting Hou, Guangyong Zheng, Pingyu Zhang, Jia Jia, Jing Li, Lu Xie, Chaochun Wei, Yixue Li

published 20 Feb 2014

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Citrus sinensis Annotation Project (CAP): A Comprehensive Database for Sweet Orange Genome

Jia Wang, Dijun Chen, Yang Lei, Ji-Wei Chang, Bao-Hai Hao, Feng Xing, Sen Li, Qiang Xu, Xiu-Xin Deng, Ling-Ling Chen

published 28 Jan 2014

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HTSstation: A Web Application and Open-Access Libraries for High-Throughput Sequencing Data Analysis

Fabrice P. A. David, Julien Delafontaine, Solenne Carat, Frederick J. Ross, Gregory Lefebvre, Yohan Jarosz, Lucas Sinclair, Daan Noordermeer, Jacques Rougemont, Marion Leleu

published 27 Jan 2014

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Using a Web-Based Application to Define the Accuracy of Diagnostic Tests When the Gold Standard Is Imperfect

Cherry Lim, Prapass Wannapinij, Lisa White, Nicholas P. J. Day, Ben S. Cooper, Sharon J. Peacock, Direk Limmathurotsakul

published 12 Nov 2013

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C-PAmP: Large Scale Analysis and Database Construction Containing High Scoring Computationally Predicted Antimicrobial Peptides for All the Available Plant Species

Anastasia Niarchou, Anastasia Alexandridou, Emmanouil Athanasiadis, George Spyrou

published 11 Nov 2013

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SIDD: A Semantically Integrated Database towards a Global View of Human Disease

Liang Cheng, Guohua Wang, Jie Li, Tianjiao Zhang, Peigang Xu, Yadong Wang

published 11 Oct 2013

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A Generalized Model to Estimate the Statistical Power in Mitochondrial Disease Studies Involving 2×k Tables

Jacobo Pardo-Seco, Jorge Amigo, Wenceslao González-Manteiga, Antonio Salas

published 27 Sep 2013

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SurvExpress: An Online Biomarker Validation Tool and Database for Cancer Gene Expression Data Using Survival Analysis

Raul Aguirre-Gamboa, Hugo Gomez-Rueda, Emmanuel Martínez-Ledesma, Antonio Martínez-Torteya, Rafael Chacolla-Huaringa, Alberto Rodriguez-Barrientos, José G. Tamez-Peña, Victor Treviño

published 16 Sep 2013

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GobyWeb: Simplified Management and Analysis of Gene Expression and DNA Methylation Sequencing Data

Kevin C. Dorff, Nyasha Chambwe, Zachary Zeno, Manuele Simi, Rita Shaknovich, Fabien Campagne

published 23 Jul 2013

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Simplified Method for Predicting a Functional Class of Proteins in Transcription Factor Complexes

Marek J. Piatek, Michael C. Schramm, Dharani D. Burra, Abdulaziz binShbreen, Boris R. Jankovic, Rajesh Chowdhary, John A.C. Archer, Vladimir B. Bajic

published 12 Jul 2013

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RMOD: A Tool for Regulatory Motif Detection in Signaling Network

Jinki Kim, Gwan-Su Yi

published 12 Jul 2013

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LAMP: A Database Linking Antimicrobial Peptides

Xiaowei Zhao, Hongyu Wu, Hairong Lu, Guodong Li, Qingshan Huang

published 18 Jun 2013

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