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Viral evolution

Not so unique to Primates: The independent adaptive evolution of TRIM5 in Lagomorpha lineage

Ana Águeda-Pinto, Ana Lemos de Matos, Ana Pinheiro, Fabiana Neves, Patrícia de Sousa-Pereira, Pedro J. Esteves

published 12 Dec 2019

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A new resolution function to evaluate tree shape statistics

Maryam Hayati, Bita Shadgar, Leonid Chindelevitch

published 21 Nov 2019

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Molecular characteristics of segment 5, a unique fragment encoding two partially overlapping ORFs in the genome of rice black-streaked dwarf virus

Hongyue Zu, Hong Zhang, Minhao Yao, Jiayue Zhang, Hong Di, Lin Zhang, Ling Dong, Zhenhua Wang, Yu Zhou

published 07 Nov 2019

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Analysis of group evolution prediction in complex networks

Stanisław Saganowski, Piotr Bródka, Michał Koziarski, Przemysław Kazienko

published 29 Oct 2019

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Rapid evolution of Mexican H7N3 highly pathogenic avian influenza viruses in poultry

Sungsu Youk, Dong-Hun Lee, Helena L. Ferreira, Claudio L. Afonso, Angel E. Absalon, David E. Swayne, David L. Suarez, Mary J. Pantin-Jackwood

published 12 Sep 2019

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Evolutionary dynamics of the H7N9 avian influenza virus based on large-scale sequence analysis

Jiasheng Xiong, Ping Zhao, Pengfei Yang, Qingli Yan, Lufang Jiang

published 12 Aug 2019

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Genetic and antigenic variation of foot-and-mouth disease virus during persistent infection in naturally infected cattle and Asian buffalo in India

Jitendra K. Biswal, Rajeev Ranjan, Saravanan Subramaniam, Jajati K. Mohapatra, Sanjay Patidar, Mukesh K. Sharma, Miranda R. Bertram, Barbara Brito, Luis L. Rodriguez, Bramhadev Pattnaik, Jonathan Arzt

published 21 Jun 2019

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Sub-genotype phylogeny of the non-G, non-P genes of genotype 2 Rotavirus A strains

Chantal Ama Agbemabiese, Toyoko Nakagomi, Susan Afua Damanka, Francis Ekow Dennis, Belinda Larteley Lartey, George Enyimah Armah, Osamu Nakagomi

published 31 May 2019

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Epistasis detectably alters correlations between genomic sites in a narrow parameter window

Gabriele Pedruzzi, Igor M. Rouzine

published 31 May 2019

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Complete genome sequencing and evolutionary analysis of HCV subtype 6xg from IDUs in Yunnan, China

Min Chen, Yanling Ma, Huichao Chen, Jie Dai, Hongbing Luo, Manhong Jia, Zhizhong Song

published 16 May 2019

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Role of efavirenz plasma concentrations on long-term HIV suppression and immune restoration in HIV-infected children

Nontiya Homkham, Tim R. Cressey, Naim Bouazza, Lily Ingsrisawang, Pornchai Techakunakorn, Jutarat Mekmullica, Thitiporn Borkird, Achara Puangsombat, Sathaporn Na-Rajsima, Jean Marc Treluyer, Saik Urien, Gonzague Jourdain

published 16 May 2019

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Positive selection and recombination shaped the large genetic differentiation of Beet black scorch virus population

Shirin Farzadfar, Reza Pourrahim

published 25 Apr 2019

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The evolution of a super-swarm of foot-and-mouth disease virus in cattle

Jonathan Arzt, Ian Fish, Steven J. Pauszek, Shannon L. Johnson, Patrick S. Chain, Devendra K. Rai, Elizabeth Rieder, Tony L. Goldberg, Luis L. Rodriguez, Carolina Stenfeldt

published 25 Apr 2019

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