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Viral evolution

Genomic and immunogenic changes of Piscine novirhabdovirus (Viral Hemorrhagic Septicemia Virus) over its evolutionary history in the Laurentian Great Lakes

Megan D. Niner, Carol A. Stepien, Bartolomeo Gorgoglione, Douglas W. Leaman

published 28 May 2021

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Machine-learning a virus assembly fitness landscape

Pierre-Philippe Dechant, Yang-Hui He

published 05 May 2021

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Risk of rapid evolutionary escape from biomedical interventions targeting SARS-CoV-2 spike protein

Debra Van Egeren, Alexander Novokhodko, Madison Stoddard, Uyen Tran, Bruce Zetter, Michael Rogers, Bradley L. Pentelute, Jonathan M. Carlson, Mark Hixon, Diane Joseph-McCarthy, Arijit Chakravarty

published 28 Apr 2021

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Probability of consolidation constrains novel serotype emergence in dengue fever virus

Gilberto Sánchez-González, Zachery R. Belak, Luis Lozano, Renaud Condé

published 05 Apr 2021

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The characteristics and evolution of pulmonary fibrosis in COVID-19 patients as assessed by AI-assisted chest HRCT

Jia-Ni Zou, Liu Sun, Bin-Ru Wang, You Zou, Shan Xu, Yong-Jun Ding, Li-Jun Shen, Wen-Cai Huang, Xiao-Jing Jiang, Shi-Ming Chen

published 23 Mar 2021

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Structural analysis of viral ExoN domains reveals polyphyletic hijacking events

Adrián Cruz-González, Israel Muñoz-Velasco, Wolfgang Cottom-Salas, Arturo Becerra, José A. Campillo-Balderas, Ricardo Hernández-Morales, Alberto Vázquez-Salazar, Rodrigo Jácome, Antonio Lazcano

published 17 Mar 2021

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Genomic characterization and evolution of SARS-CoV-2 of a Canadian population

Manna Zhang, Lin Li, Ma Luo, Binhua Liang

published 04 Mar 2021

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Metagenomic sequencing generates the whole genomes of porcine rotavirus A, C, and H from the United States

Jennifer J. A. Hull, Mingpu Qi, Anna M. Montmayeur, Deepak Kumar, Daniel E. Velasquez, Sung-Sil Moon, Laura Cristal Magaña, Naga Betrapally, Terry Fei Fan Ng, Baoming Jiang, Douglas Marthaler

published 29 Dec 2020

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Mutational networks of escape from transmitted HIV-1 infection

Elma H. Akand, Stephen J. Maher, John M. Murray

published 07 Dec 2020

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Beyond the peak: A deterministic compartment model for exploring the Covid-19 evolution in Italy

Silvio Romano, Annalisa Fierro, Antonella Liccardo

published 06 Nov 2020

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Emergence of a novel chikungunya virus strain bearing the E1:V80A substitution, out of the Mombasa, Kenya 2017-2018 outbreak

Fredrick Eyase, Solomon Langat, Irina Maljkovic Berry, Francis Mulwa, Albert Nyunja, James Mutisya, Samuel Owaka, Samson Limbaso, Victor Ofula, Hellen Koka, Edith Koskei, Joel Lutomiah, Richard G. Jarman, Rosemary Sang

published 06 Nov 2020

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Variant analysis of 1,040 SARS-CoV-2 genomes

Eric C. Rouchka, Julia H. Chariker, Donghoon Chung

published 05 Nov 2020

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Modeling the load of SARS-CoV-2 virus in human expelled particles during coughing and speaking

Yang Wang, Guang Xu, Yue-Wern Huang

published 30 Oct 2020

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