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Viral evolution

Consecutive deletions in a unique Uruguayan SARS-CoV-2 lineage evidence the genetic variability potential of accessory genes

Yanina Panzera, Lucía Calleros, Natalia Goñi, Ana Marandino, Claudia Techera, Sofía Grecco, Natalia Ramos, Sandra Frabasile, Gonzalo Tomás, Emma Condon, María Noel Cortinas, Viviana Ramas, Leticia Coppola, Cecilia Sorhouet, Cristina Mogdasy, Héctor Chiparelli, Juan Arbiza, Adriana Delfraro, Ruben Pérez

published 17 Feb 2022

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Genomic surveillance of SARS-CoV-2 Spike gene by sanger sequencing

Tiago Souza Salles, Andrea Cony Cavalcanti, Fábio Burack da Costa, Vanessa Zaquieu Dias, Leandro Magalhães de Souza, Marcelo Damião Ferreira de Meneses, José Antônio Suzano da Silva, Cinthya Domingues Amaral, Jhonatan Ramos Felix, Duleide Alves Pereira, Stefanella Boatto, Maria Angélica Arpon Marandino Guimarães, Davis Fernandes Ferreira, Renata Campos Azevedo

published 20 Jan 2022

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Local occurrence and fast spread of B.1.1.7 lineage: A glimpse into Friuli Venezia Giulia

Catia Mio, Chiara Dal Secco, Stefania Marzinotto, Claudio Bruno, Santa Pimpo, Elena Betto, Martina Bertoni, Corrado Pipan, Emanuela Sozio, Carlo Tascini, Giuseppe Damante, Francesco Curcio

published 14 Dec 2021

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Application of principal component analysis on temporal evolution of COVID-19

Ashadun Nobi, Kamrul Hasan Tuhin, Jae Woo Lee

published 02 Dec 2021

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Phylogeography and phylogeny of Rhinoviruses collected from Severe Acute Respiratory Infection (SARI) cases over successive epidemic periods in Tunisia

Sondes Haddad-Boubaker, Cherif Ben Hamda, Kais Ghedira, Khaoula Mefteh, Aida Bouafsoun, Ilhem Boutiba-Ben Boubaker, Amin Slim, Khaled Menif, Henda Triki, Mohamed Ali Ben Hadj Kacem, Hanen Smaoui

published 22 Nov 2021

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Modelling digital and manual contact tracing for COVID-19. Are low uptakes and missed contacts deal-breakers?

Andrei C. Rusu, Rémi Emonet, Katayoun Farrahi

published 18 Nov 2021

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Evaluation of the SARS-CoV-2 positivity ratio and upper respiratory tract viral load among asymptomatic individuals screened before hospitalization or surgery in Flanders, Belgium

Laura Heireman, Steven Abrams, Peggy Bruynseels, Reinoud Cartuyvels, Lize Cuypers, Pieter De Schouwer, Wim Laffut, Katrien Lagrou, Niel Hens, Erwin Ho, Elizaveta Padalko, Marijke Reynders, Sarah Vandamme, Nathalie Van der Moeren, Walter Verstrepen, Philippe Willems, Reinout Naesens

published 11 Nov 2021

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Canine bocavirus-2 infection and its possible association with encephalopathy in domestic dogs

Chutchai Piewbang, Sabrina Wahyu Wardhani, Wichan Dankaona, Sitthichok Lacharoje, Poowadon Chai-in, Jakarwan Yostawonkul, Jira Chanseanroj, Suwimon Boonrungsiman, Tanit Kasantikul, Yong Poovorawan, Somporn Techangamsuwan

published 12 Aug 2021

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Modeling neutral viral mutations in the spread of SARS-CoV-2 epidemics

Vitor M. Marquioni, Marcus A. M. de Aguiar

published 29 Jul 2021

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SARS-CoV-2 variant evolution in the United States: High accumulation of viral mutations over time likely through serial Founder Events and mutational bursts

Rafail Nikolaos Tasakis, Georgios Samaras, Anna Jamison, Michelle Lee, Alexandra Paulus, Gabrielle Whitehouse, Laurent Verkoczy, F. Nina Papavasiliou, Marilyn Diaz

published 23 Jul 2021

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Heterogeneity matters: Contact structure and individual variation shape epidemic dynamics

Gerrit Großmann, Michael Backenköhler, Verena Wolf

published 20 Jul 2021

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Genomic and immunogenic changes of Piscine novirhabdovirus (Viral Hemorrhagic Septicemia Virus) over its evolutionary history in the Laurentian Great Lakes

Megan D. Niner, Carol A. Stepien, Bartolomeo Gorgoglione, Douglas W. Leaman

published 28 May 2021

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Machine-learning a virus assembly fitness landscape

Pierre-Philippe Dechant, Yang-Hui He

published 05 May 2021

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