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Viral evolution

Phylodynamics of a regional SARS-CoV-2 rapid spreading event in Colorado in late 2020

Kristen J. Wade, Samantha Tisa, Chloe Barrington, Jesslyn C. Henriksen, Kristy R. Crooks, Christopher R. Gignoux, Austin T. Almand, J. Jordan Steel, John C. Sitko, Joseph W. Rohrer, Douglas P. Wickert, Erin A. Almand, David D. Pollock, Olivia S. Rissland

published 04 Oct 2022

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Genomic characterization of SARS-CoV-2 from vaccine breakthrough cases in Allegheny County, Pennsylvania

Kady D. Waggle, Marissa P. Griffith, Lei Zhu, Vaughn S. Cooper, Daniel J. Snyder, Vatsala Srinivasa, Tung Phan, Alan Wells, Graham M. Snyder, Daria Van Tyne, Lee H. Harrison, Jane W. Marsh

published 31 Aug 2022

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High activity of an affinity-matured ACE2 decoy against Omicron SARS-CoV-2 and pre-emergent coronaviruses

Joshua J. Sims, Sharon Lian, Rosemary L. Meggersee, Aradhana Kasimsetty, James M. Wilson

published 25 Aug 2022

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Covariance predicts conserved protein residue interactions important for the emergence and continued evolution of SARS-CoV-2 as a human pathogen

William P. Robins, John J. Mekalanos

published 27 Jul 2022

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Darwin’s tales–A content analysis of how evolution is presented in children’s books

Isabell K. Adler, Daniela Fiedler, Ute Harms

published 13 Jul 2022

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Vaccination and variants: Retrospective model for the evolution of Covid-19 in Italy

Annalisa Fierro, Silvio Romano, Antonella Liccardo

published 08 Jul 2022

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Genetic subtyping and phylogenetic analysis of HA and NA from avian influenza virus in wild birds from Peru reveals unique features among circulating strains in America

Gina R. Castro-Sanguinetti, Paulo Vitor Marques Simas, Ana Paola Apaza-Chiara, Jose Alonso Callupe-Leyva, Juan Alexander Rondon-Espinoza, Cesar M. Gavidia, Juan Anderson More-Bayona, Rosa Isabel Gonzalez Veliz, Vikram N. Vakharia, Maria Eliana Icochea

published 07 Jun 2022

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Unconstrained coevolution of bacterial size and the latent period of plastic phage

Juan A. Bonachela, Melinda Choua, Michael R. Heath

published 26 May 2022

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Deep phylogenetic-based clustering analysis uncovers new and shared mutations in SARS-CoV-2 variants as a result of directional and convergent evolution

Danilo Rosa Nunes, Carla Torres Braconi, Louisa F. Ludwig-Begall, Clarice Weis Arns, Ricardo Durães-Carvalho

published 24 May 2022

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Analysis of temporal changes in HIV-1 CRF01_AE gag genetic variability and CD8 T-cell epitope evolution

Wardah Rafaqat, Uroosa Tariq, Nida Farooqui, Maheen Zaidi, Aanish Raees, Maaz Zuberi, Amna Batool, Syed Hani Abidi

published 10 May 2022

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Genetic characterization of upper respiratory tract virome from nonvaccinated Egyptian cow-calf operations

Abdou Nagy, Fatma Abdallah, Hend M. El Damaty, Ahmed Tariq, Abdallah M. A. Merwad, Bader Y. Alhatlani, Ibrahim Elsohaby

published 05 May 2022

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Consecutive deletions in a unique Uruguayan SARS-CoV-2 lineage evidence the genetic variability potential of accessory genes

Yanina Panzera, Lucía Calleros, Natalia Goñi, Ana Marandino, Claudia Techera, Sofía Grecco, Natalia Ramos, Sandra Frabasile, Gonzalo Tomás, Emma Condon, María Noel Cortinas, Viviana Ramas, Leticia Coppola, Cecilia Sorhouet, Cristina Mogdasy, Héctor Chiparelli, Juan Arbiza, Adriana Delfraro, Ruben Pérez

published 17 Feb 2022

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Genomic surveillance of SARS-CoV-2 Spike gene by sanger sequencing

Tiago Souza Salles, Andrea Cony Cavalcanti, Fábio Burack da Costa, Vanessa Zaquieu Dias, Leandro Magalhães de Souza, Marcelo Damião Ferreira de Meneses, José Antônio Suzano da Silva, Cinthya Domingues Amaral, Jhonatan Ramos Felix, Duleide Alves Pereira, Stefanella Boatto, Maria Angélica Arpon Marandino Guimarães, Davis Fernandes Ferreira, Renata Campos Azevedo

published 20 Jan 2022

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