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Viral evolution

Data-driven multiscale dynamical framework to control a pandemic evolution with non-pharmaceutical interventions

Jürgen Reingruber, Andrea Papale, [ ... ], David Holcman

Assessment of positive selection across SARS-CoV-2 variants via maximum likelihood

Carly Middleton, Laura Kubatko

Genomic characterization of SARS-CoV-2 from vaccine breakthrough cases in Allegheny County, Pennsylvania

Kady D. Waggle, Marissa P. Griffith, [ ... ], Jane W. Marsh

Deciphering the genetic landscape of tomato leaf curl New Delhi virus: Dynamic and region-specific diversity revealed by comprehensive sequence analyses

Zafar Iqbal, Adil Alshoaibi, [ ... ], Khaled Muhammad Amin Ramadan

Increased preference for lysine over arginine in spike proteins of SARS-CoV-2 BA.2.86 variant and its daughter lineages

Anže Božič, Rudolf Podgornik

Investigating the evolutionary dynamics and mutational pattern of SARS-CoV-2 spike gene on selected SARS-CoV-2 variants

Bachir Balech, Alessandra Lo Presti, [ ... ], on behalf of the Italian Genomic Laboratory Network

Variant evolution graph: Can we infer how SARS-CoV-2 variants are evolving?

Badhan Das, Lenwood S. Heath

Passage of human-origin influenza A virus in swine tracheal epithelial cells selects for adaptive mutations in the hemagglutinin gene

Jongsuk Mo, Lucas M. Ferreri, [ ... ], Daniela S. Rajao

Diversity, recombination and misclassification in the family Geminiviridae: Insight from bioinformatics analysis

Moshood Olamide Lateef, Dauda Nathaniel, Bolaji Osundahunsi, Neil Arvin Bretana

SARS-CoV-2 sequencing artifacts associated with targeted PCR enrichment and read mapping

Kirsten Maren Ellegaard, Vithiagaran Gunalan, [ ... ], Marc Stegger

Transmission matrix parameter estimation of COVID-19 evolution with age compartments using ensemble-based data assimilation

Santiago Rosa, Manuel A. Pulido, Juan J. Ruiz, Tadeo J. Cocucci

Identification and genetic characterization of Jingmen tick virus from ticks sampled in select regions of Kenya; 2022–2024

Lydia Mwasi, Samoel Khamadi, [ ... ], Fredrick Eyase

Numerical investigation of a reaction-diffusion model used for rumor spreading in a ‘street’

Feiyun Pei, Yamin Du

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