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Viral evolution

Genetic Diversity in the SIR Model of Pathogen Evolution

Isabel Gordo, M. Gabriela M. Gomes, Daniel G. Reis, Paulo R. A. Campos

A Systematic Survey of Mini-Proteins in Bacteria and Archaea

Fengyu Wang, Jingfa Xiao, [ ... ], Jun Yu

A Method for the Simultaneous Estimation of Selection Intensities in Overlapping Genes

Niv Sabath, Giddy Landan, Dan Graur

The Evolutionary Selective Advantage of HIV-1 Escape Variants and the Contribution of Escape to the HLA-Associated Risk of AIDS Progression

Becca Asquith

Comparison of Classifier Fusion Methods for Predicting Response to Anti HIV-1 Therapy

André Altmann, Michal Rosen-Zvi, [ ... ], Thomas Lengauer

HLA-Driven Convergence of HIV-1 Viral Subtypes B and F Toward the Adaptation to Immune Responses in Human Populations

Dario Alberto Dilernia, Leandro Jones, [ ... ], Horacio Salomón

Molecular Evolution of Human Immunodeficiency Virus Type 1 upon Transmission between Human Leukocyte Antigen Disparate Donor-Recipient Pairs

Marjon Navis, Diana Edo Matas, [ ... ], Hanneke Schuitemaker

Virus Adaptation by Manipulation of Host's Gene Expression

Patricia Agudelo-Romero, Pablo Carbonell, Miguel A. Perez-Amador, Santiago F. Elena

Hepatitis C Virus Diversity and Evolution in the Full Open-Reading Frame during Antiviral Therapy

Nathan A. Cannon, Maureen J. Donlin, [ ... ], for the Virahep-C Study Group

Structure of the Scientific Community Modelling the Evolution of Resistance

REX Consortium

Adaptive Evolution of a Stress Response Protein

Tom J. Little, Lenny Nelson, Ted Hupp

Phylodynamics of HIV-1 in Lymphoid and Non-Lymphoid Tissues Reveals a Central Role for the Thymus in Emergence of CXCR4-Using Quasispecies

Marco Salemi, Brant R. Burkhardt, [ ... ], Maureen M. Goodenow

HIV-Specific Probabilistic Models of Protein Evolution

David C. Nickle, Laura Heath, [ ... ], Sergei L. Kosakovsky Pond

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