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Viral evolution

Initial Fitness Recovery of HIV-1 Is Associated with Quasispecies Heterogeneity and Can Occur without Modifications in the Consensus Sequence

Antonio V. Bordería, Ramon Lorenzo-Redondo, [ ... ], Cecilio Lopez-Galindez

The HIV-1 Integrase Mutations Y143C/R Are an Alternative Pathway for Resistance to Raltegravir and Impact the Enzyme Functions

Sandrine Reigadas, Guerric Anies, [ ... ], Marie-Line Andreola

Periodic Table of Virus Capsids: Implications for Natural Selection and Design

Ranjan V. Mannige, Charles L. Brooks III

HLA Class I Restriction as a Possible Driving Force for Chikungunya Evolution

Joo Chuan Tong, Diane Simarmata, [ ... ], Lisa F. P. Ng

Intraseasonal Dynamics and Dominant Sequences in H3N2 Influenza

Nicole Creanza, Jason S. Schwarz, Joel E. Cohen

Experimental Passage of St. Louis Encephalitis Virus In Vivo in Mosquitoes and Chickens Reveals Evolutionarily Significant Virus Characteristics

Alexander T. Ciota, Yongqing Jia, [ ... ], Laura D. Kramer

Evolutionary Trends of A(H1N1) Influenza Virus Hemagglutinin Since 1918

Jun Shen, Jianpeng Ma, Qinghua Wang

Influenza A Gradual and Epochal Evolution: Insights from Simple Models

Sébastien Ballesteros, Elisabeta Vergu, Bernard Cazelles

V3 Loop Sequence Space Analysis Suggests Different Evolutionary Patterns of CCR5- and CXCR4-Tropic HIV

Katarzyna Bozek, Alexander Thielen, [ ... ], Thomas Lengauer

HLA-Associated Immune Escape Pathways in HIV-1 Subtype B Gag, Pol and Nef Proteins

Zabrina L. Brumme, Mina John, [ ... ], Simon Mallal

The Evolution of the Major Hepatitis C Genotypes Correlates with Clinical Response to Interferon Therapy

Phillip S. Pang, Paul J. Planet, Jeffrey S. Glenn

Evolution and Phylogenetic Analysis of Full-Length VP3 Genes of Eastern Mediterranean Bluetongue Virus Isolates

Kyriaki Nomikou, Chrysostomos Ι. Dovas, [ ... ], Peter P. C. Mertens

Symbiotic Virus at the Evolutionary Intersection of Three Types of Large DNA Viruses; Iridoviruses, Ascoviruses, and Ichnoviruses

Yves Bigot, Sylvaine Renault, [ ... ], Brian A. Federici

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