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Viral evolution

HLA-Associated Immune Escape Pathways in HIV-1 Subtype B Gag, Pol and Nef Proteins

Zabrina L. Brumme, Mina John, Jonathan M. Carlson, Chanson J. Brumme, Dennison Chan, Mark A. Brockman, Luke C. Swenson, Iris Tao, Sharon Szeto, Pamela Rosato, Jennifer Sela, Carl M. Kadie, Nicole Frahm, Christian Brander, David W. Haas, Sharon A. Riddler, Richard Haubrich, Bruce D. Walker, P. Richard Harrigan, David Heckerman, Simon Mallal

published 19 Aug 2009

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The Evolution of the Major Hepatitis C Genotypes Correlates with Clinical Response to Interferon Therapy

Phillip S. Pang, Paul J. Planet, Jeffrey S. Glenn

published 11 Aug 2009

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Evolution and Phylogenetic Analysis of Full-Length VP3 Genes of Eastern Mediterranean Bluetongue Virus Isolates

Kyriaki Nomikou, Chrysostomos Ι. Dovas, Sushila Maan, Simon J. Anthony, Alan R. Samuel, Maria Papanastassopoulou, Narender S. Maan, Olga Mangana, Peter P. C. Mertens

published 30 Jul 2009

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Symbiotic Virus at the Evolutionary Intersection of Three Types of Large DNA Viruses; Iridoviruses, Ascoviruses, and Ichnoviruses

Yves Bigot, Sylvaine Renault, Jacques Nicolas, Corinne Moundras, Marie-Véronique Demattei, Sylvie Samain, Dennis K. Bideshi, Brian A. Federici

published 28 Jul 2009

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Evolutionary Insights from a Genetically Divergent Hantavirus Harbored by the European Common Mole (Talpa europaea)

Hae Ji Kang, Shannon N. Bennett, Laarni Sumibcay, Satoru Arai, Andrew G. Hope, Gabor Mocz, Jin-Won Song, Joseph A. Cook, Richard Yanagihara

published 07 Jul 2009

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Quantitative Deep Sequencing Reveals Dynamic HIV-1 Escape and Large Population Shifts during CCR5 Antagonist Therapy In Vivo

Athe M. N. Tsibris, Bette Korber, Ramy Arnaout, Carsten Russ, Chien-Chi Lo, Thomas Leitner, Brian Gaschen, James Theiler, Roger Paredes, Zhaohui Su, Michael D. Hughes, Roy M. Gulick, Wayne Greaves, Eoin Coakley, Charles Flexner, Chad Nusbaum, Daniel R. Kuritzkes

published 25 May 2009

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The G428A Nonsense Mutation in FUT2 Provides Strong but Not Absolute Protection against Symptomatic GII.4 Norovirus Infection

Beatrice Carlsson, Elin Kindberg, Javier Buesa, Gustaf E. Rydell, Marta Fos Lidón, Rebeca Montava, Reem Abu Mallouh, Ammi Grahn, Jesús Rodríguez-Díaz, Juan Bellido, Alberto Arnedo, Göran Larson, Lennart Svensson

published 18 May 2009

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Evolutionary Repercussions of Avian Culling on Host Resistance and Influenza Virulence

Eunha Shim, Alison P. Galvani

published 11 May 2009

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Conservation and Variability of West Nile Virus Proteins

Qi Ying Koo, Asif M. Khan, Keun-Ok Jung, Shweta Ramdas, Olivo Miotto, Tin Wee Tan, Vladimir Brusic, Jerome Salmon, J. Thomas August

published 29 Apr 2009

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Conservation of Carbohydrate Binding Interfaces — Evidence of Human HBGA Selection in Norovirus Evolution

Ming Tan, Ming Xia, Yutao Chen, Weiming Bu, Rashmi S. Hegde, Jarek Meller, Xuemei Li, Xi Jiang

published 01 Apr 2009

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Genetic Diversity in the SIR Model of Pathogen Evolution

Isabel Gordo, M. Gabriela M. Gomes, Daniel G. Reis, Paulo R. A. Campos

published 16 Mar 2009

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A Systematic Survey of Mini-Proteins in Bacteria and Archaea

Fengyu Wang, Jingfa Xiao, Linlin Pan, Ming Yang, Guoqiang Zhang, Shouguang Jin, Jun Yu

published 24 Dec 2008

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A Method for the Simultaneous Estimation of Selection Intensities in Overlapping Genes

Niv Sabath, Giddy Landan, Dan Graur

published 22 Dec 2008

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