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Viral evolution

Proteotyping to Establish Gene Origin within Reassortant Influenza Viruses

Ji-won Ha, Alexander B. Schwahn, Kevin M. Downard

Dynamics of Viral Evolution and CTL Responses in HIV-1 Infection

Yi Liu, John P. McNevin, [ ... ], James I. Mullins

Evolutionary and Structural Features of the C2, V3 and C3 Envelope Regions Underlying the Differences in HIV-1 and HIV-2 Biology and Infection

Helena Barroso, Pedro Borrego, [ ... ], Nuno Taveira

Taking Multiple Infections of Cells and Recombination into Account Leads to Small Within-Host Effective-Population-Size Estimates of HIV-1

Rajesh Balagam, Vasantika Singh, Aparna Raju Sagi, Narendra M. Dixit

Dynamics of Glycoprotein Charge in the Evolutionary History of Human Influenza

Nimalan Arinaminpathy, Bryan Grenfell

Evolutionary History and Population Dynamics of Hepatitis E Virus

Michael A. Purdy, Yury E. Khudyakov

The Threshold Bootstrap Clustering: A New Approach to Find Families or Transmission Clusters within Molecular Quasispecies

Mattia C. F. Prosperi, Andrea De Luca, [ ... ], Marco Salemi

Evolutionary Trajectory of White Spot Syndrome Virus (WSSV) Genome Shrinkage during Spread in Asia

Mark P. Zwart, Bui Thi Minh Dieu, Lia Hemerik, Just M. Vlak

Molecular Evolution of the Primate Antiviral Restriction Factor Tetherin

Jun Liu, Keping Chen, Jian-Hua Wang, Chiyu Zhang

The Re-Emergence of H1N1 Influenza Virus in 1977: A Cautionary Tale for Estimating Divergence Times Using Biologically Unrealistic Sampling Dates

Joel O. Wertheim

Molecular Evolutionary Analysis of the Influenza A(H1N1)pdm, May–September, 2009: Temporal and Spatial Spreading Profile of the Viruses in Japan

Teiichiro Shiino, Nobuhiko Okabe, [ ... ], Haruo Watanabe

Rhinovirus Genome Evolution during Experimental Human Infection

Samuel Cordey, Thomas Junier, [ ... ], Laurent Kaiser

Guidelines for Identifying Homologous Recombination Events in Influenza A Virus

Maciej F. Boni, Menno D. de Jong, H. Rogier van Doorn, Edward C. Holmes

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