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Viral evolution

Within-Host Dynamics of the Hepatitis C Virus Quasispecies Population in HIV-1/HCV Coinfected Patients

Flavia Bernini, Erika Ebranati, Chiara De Maddalena, Renata Shkjezi, Laura Milazzo, Alessandra Lo Presti, Massimo Ciccozzi, Massimo Galli, Gianguglielmo Zehender

published 31 Jan 2011

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Proteotyping to Establish Gene Origin within Reassortant Influenza Viruses

Ji-won Ha, Alexander B. Schwahn, Kevin M. Downard

published 31 Jan 2011

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Dynamics of Viral Evolution and CTL Responses in HIV-1 Infection

Yi Liu, John P. McNevin, Sarah Holte, M. Juliana McElrath, James I. Mullins

published 20 Jan 2011

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Evolutionary and Structural Features of the C2, V3 and C3 Envelope Regions Underlying the Differences in HIV-1 and HIV-2 Biology and Infection

Helena Barroso, Pedro Borrego, Inês Bártolo, José Maria Marcelino, Carlos Família, Alexandre Quintas, Nuno Taveira

published 20 Jan 2011

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Taking Multiple Infections of Cells and Recombination into Account Leads to Small Within-Host Effective-Population-Size Estimates of HIV-1

Rajesh Balagam, Vasantika Singh, Aparna Raju Sagi, Narendra M. Dixit

published 13 Jan 2011

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Dynamics of Glycoprotein Charge in the Evolutionary History of Human Influenza

Nimalan Arinaminpathy, Bryan Grenfell

published 30 Dec 2010

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Evolutionary History and Population Dynamics of Hepatitis E Virus

Michael A. Purdy, Yury E. Khudyakov

published 17 Dec 2010

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The Threshold Bootstrap Clustering: A New Approach to Find Families or Transmission Clusters within Molecular Quasispecies

Mattia C. F. Prosperi, Andrea De Luca, Simona Di Giambenedetto, Laura Bracciale, Massimiliano Fabbiani, Roberto Cauda, Marco Salemi

published 25 Oct 2010

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Evolutionary Trajectory of White Spot Syndrome Virus (WSSV) Genome Shrinkage during Spread in Asia

Mark P. Zwart, Bui Thi Minh Dieu, Lia Hemerik, Just M. Vlak

published 14 Oct 2010

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Molecular Evolution of the Primate Antiviral Restriction Factor Tetherin

Jun Liu, Keping Chen, Jian-Hua Wang, Chiyu Zhang

published 30 Jul 2010

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The Re-Emergence of H1N1 Influenza Virus in 1977: A Cautionary Tale for Estimating Divergence Times Using Biologically Unrealistic Sampling Dates

Joel O. Wertheim

published 17 Jun 2010

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Molecular Evolutionary Analysis of the Influenza A(H1N1)pdm, May–September, 2009: Temporal and Spatial Spreading Profile of the Viruses in Japan

Teiichiro Shiino, Nobuhiko Okabe, Yoshinori Yasui, Tomimasa Sunagawa, Makoto Ujike, Masatsugu Obuchi, Noriko Kishida, Hong Xu, Emi Takashita, Akane Anraku, Reiko Ito, Teruko Doi, Miho Ejima, Hiromi Sugawara, Hiroshi Horikawa, Shuji Yamazaki, Yumiko Kato, Akio Oguchi, Nobuyuki Fujita, Takato Odagiri, Masato Tashiro, Haruo Watanabe

published 10 Jun 2010

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Rhinovirus Genome Evolution during Experimental Human Infection

Samuel Cordey, Thomas Junier, Daniel Gerlach, Francesca Gobbini, Laurent Farinelli, Evgeny M. Zdobnov, Birgit Winther, Caroline Tapparel, Laurent Kaiser

published 11 May 2010

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