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Viral evolution

The Re-Emergence of H1N1 Influenza Virus in 1977: A Cautionary Tale for Estimating Divergence Times Using Biologically Unrealistic Sampling Dates

Joel O. Wertheim

published 17 Jun 2010

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Molecular Evolutionary Analysis of the Influenza A(H1N1)pdm, May–September, 2009: Temporal and Spatial Spreading Profile of the Viruses in Japan

Teiichiro Shiino, Nobuhiko Okabe, Yoshinori Yasui, Tomimasa Sunagawa, Makoto Ujike, Masatsugu Obuchi, Noriko Kishida, Hong Xu, Emi Takashita, Akane Anraku, Reiko Ito, Teruko Doi, Miho Ejima, Hiromi Sugawara, Hiroshi Horikawa, Shuji Yamazaki, Yumiko Kato, Akio Oguchi, Nobuyuki Fujita, Takato Odagiri, Masato Tashiro, Haruo Watanabe

published 10 Jun 2010

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Rhinovirus Genome Evolution during Experimental Human Infection

Samuel Cordey, Thomas Junier, Daniel Gerlach, Francesca Gobbini, Laurent Farinelli, Evgeny M. Zdobnov, Birgit Winther, Caroline Tapparel, Laurent Kaiser

published 11 May 2010

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Guidelines for Identifying Homologous Recombination Events in Influenza A Virus

Maciej F. Boni, Menno D. de Jong, H. Rogier van Doorn, Edward C. Holmes

published 03 May 2010

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Initial Fitness Recovery of HIV-1 Is Associated with Quasispecies Heterogeneity and Can Occur without Modifications in the Consensus Sequence

Antonio V. Bordería, Ramon Lorenzo-Redondo, Maria Pernas, Concepción Casado, Tamara Alvaro, Esteban Domingo, Cecilio Lopez-Galindez

published 26 Apr 2010

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The HIV-1 Integrase Mutations Y143C/R Are an Alternative Pathway for Resistance to Raltegravir and Impact the Enzyme Functions

Sandrine Reigadas, Guerric Anies, Bernard Masquelier, Christina Calmels, Lieven J. Stuyver, Vincent Parissi, Herve Fleury, Marie-Line Andreola

published 26 Apr 2010

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Periodic Table of Virus Capsids: Implications for Natural Selection and Design

Ranjan V. Mannige, Charles L. Brooks III

published 04 Mar 2010

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HLA Class I Restriction as a Possible Driving Force for Chikungunya Evolution

Joo Chuan Tong, Diane Simarmata, Raymond T. P. Lin, Laurent Rénia, Lisa F. P. Ng

published 26 Feb 2010

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Intraseasonal Dynamics and Dominant Sequences in H3N2 Influenza

Nicole Creanza, Jason S. Schwarz, Joel E. Cohen

published 01 Jan 2010

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Experimental Passage of St. Louis Encephalitis Virus In Vivo in Mosquitoes and Chickens Reveals Evolutionarily Significant Virus Characteristics

Alexander T. Ciota, Yongqing Jia, Anne F. Payne, Greta Jerzak, Lauren J. Davis, David S.Young, Dylan Ehrbar, Laura D. Kramer

published 17 Nov 2009

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Evolutionary Trends of A(H1N1) Influenza Virus Hemagglutinin Since 1918

Jun Shen, Jianpeng Ma, Qinghua Wang

published 17 Nov 2009

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Influenza A Gradual and Epochal Evolution: Insights from Simple Models

Sébastien Ballesteros, Elisabeta Vergu, Bernard Cazelles

published 20 Oct 2009

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V3 Loop Sequence Space Analysis Suggests Different Evolutionary Patterns of CCR5- and CXCR4-Tropic HIV

Katarzyna Bozek, Alexander Thielen, Saleta Sierra, Rolf Kaiser, Thomas Lengauer

published 09 Oct 2009

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