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Viral evolution

The Re-Emergence of H1N1 Influenza Virus in 1977: A Cautionary Tale for Estimating Divergence Times Using Biologically Unrealistic Sampling Dates

Joel O. Wertheim

Molecular Evolutionary Analysis of the Influenza A(H1N1)pdm, May–September, 2009: Temporal and Spatial Spreading Profile of the Viruses in Japan

Teiichiro Shiino, Nobuhiko Okabe, [ ... ], Haruo Watanabe

Rhinovirus Genome Evolution during Experimental Human Infection

Samuel Cordey, Thomas Junier, [ ... ], Laurent Kaiser

Guidelines for Identifying Homologous Recombination Events in Influenza A Virus

Maciej F. Boni, Menno D. de Jong, H. Rogier van Doorn, Edward C. Holmes

Initial Fitness Recovery of HIV-1 Is Associated with Quasispecies Heterogeneity and Can Occur without Modifications in the Consensus Sequence

Antonio V. Bordería, Ramon Lorenzo-Redondo, [ ... ], Cecilio Lopez-Galindez

The HIV-1 Integrase Mutations Y143C/R Are an Alternative Pathway for Resistance to Raltegravir and Impact the Enzyme Functions

Sandrine Reigadas, Guerric Anies, [ ... ], Marie-Line Andreola

Periodic Table of Virus Capsids: Implications for Natural Selection and Design

Ranjan V. Mannige, Charles L. Brooks III

HLA Class I Restriction as a Possible Driving Force for Chikungunya Evolution

Joo Chuan Tong, Diane Simarmata, [ ... ], Lisa F. P. Ng

Intraseasonal Dynamics and Dominant Sequences in H3N2 Influenza

Nicole Creanza, Jason S. Schwarz, Joel E. Cohen

Experimental Passage of St. Louis Encephalitis Virus In Vivo in Mosquitoes and Chickens Reveals Evolutionarily Significant Virus Characteristics

Alexander T. Ciota, Yongqing Jia, [ ... ], Laura D. Kramer

Evolutionary Trends of A(H1N1) Influenza Virus Hemagglutinin Since 1918

Jun Shen, Jianpeng Ma, Qinghua Wang

Influenza A Gradual and Epochal Evolution: Insights from Simple Models

Sébastien Ballesteros, Elisabeta Vergu, Bernard Cazelles

V3 Loop Sequence Space Analysis Suggests Different Evolutionary Patterns of CCR5- and CXCR4-Tropic HIV

Katarzyna Bozek, Alexander Thielen, [ ... ], Thomas Lengauer

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