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Viral evolution

Longitudinal Study of Primary HIV-1 Isolates in Drug-Naïve Individuals Reveals the Emergence of Variants Sensitive to Anti-HIV-1 Monoclonal Antibodies

Bijayesh Haldar, Sherri Burda, [ ... ], Phillipe Nyambi

The Role of Recombination for the Coevolutionary Dynamics of HIV and the Immune Response

Rafal Mostowy, Roger D. Kouyos, David Fouchet, Sebastian Bonhoeffer

Transmission of Single and Multiple Viral Variants in Primary HIV-1 Subtype C Infection

Vladimir Novitsky, Rui Wang, [ ... ], M. Essex

Constrained Pattern of Viral Evolution in Acute and Early HCV Infection Limits Viral Plasticity

Katja Pfafferott, Silvana Gaudieri, [ ... ], Michaela Lucas

Dynamics of Molecular Evolution and Phylogeography of Barley yellow dwarf virus-PAV

Beilei Wu, Alexandra Blanchard-Letort, [ ... ], Santiago F. Elena

Within-Host Dynamics of the Hepatitis C Virus Quasispecies Population in HIV-1/HCV Coinfected Patients

Flavia Bernini, Erika Ebranati, [ ... ], Gianguglielmo Zehender

Proteotyping to Establish Gene Origin within Reassortant Influenza Viruses

Ji-won Ha, Alexander B. Schwahn, Kevin M. Downard

Dynamics of Viral Evolution and CTL Responses in HIV-1 Infection

Yi Liu, John P. McNevin, [ ... ], James I. Mullins

Evolutionary and Structural Features of the C2, V3 and C3 Envelope Regions Underlying the Differences in HIV-1 and HIV-2 Biology and Infection

Helena Barroso, Pedro Borrego, [ ... ], Nuno Taveira

Taking Multiple Infections of Cells and Recombination into Account Leads to Small Within-Host Effective-Population-Size Estimates of HIV-1

Rajesh Balagam, Vasantika Singh, Aparna Raju Sagi, Narendra M. Dixit

Dynamics of Glycoprotein Charge in the Evolutionary History of Human Influenza

Nimalan Arinaminpathy, Bryan Grenfell

Evolutionary History and Population Dynamics of Hepatitis E Virus

Michael A. Purdy, Yury E. Khudyakov

The Threshold Bootstrap Clustering: A New Approach to Find Families or Transmission Clusters within Molecular Quasispecies

Mattia C. F. Prosperi, Andrea De Luca, [ ... ], Marco Salemi

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