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Viral evolution

Human Endogenous Retrovirus K106 (HERV-K106) Was Infectious after the Emergence of Anatomically Modern Humans

Aashish R. Jha, Douglas F. Nixon, Michael G. Rosenberg, Jeffrey N. Martin, Steven G. Deeks, Richard R. Hudson, Keith E. Garrison, Satish K. Pillai

published 25 May 2011

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Variation in the Analysis of Positively Selected Sites Using Nonsynonymous/Synonymous Rate Ratios: An Example Using Influenza Virus

Jiming Chen, Yingxue Sun

published 24 May 2011

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Evolutionary Time-Scale of the Begomoviruses: Evidence from Integrated Sequences in the Nicotiana Genome

Pierre Lefeuvre, Gordon W. Harkins, Jean-Michel Lett, Rob W. Briddon, Mark W. Chase, Benoit Moury, Darren P. Martin

published 16 May 2011

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Change of Positive Selection Pressure on HIV-1 Envelope Gene Inferred by Early and Recent Samples

Izumi Yoshida, Wataru Sugiura, Junko Shibata, Fengrong Ren, Ziheng Yang, Hiroshi Tanaka

published 19 Apr 2011

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Rapid Estimation of Binding Activity of Influenza Virus Hemagglutinin to Human and Avian Receptors

Yang Cao, Xiaoying Koh, Libo Dong, Xiangjun Du, Aiping Wu, Xilai Ding, Hongyu Deng, Yuelong Shu, Jianzhu Chen, Taijiao Jiang

published 13 Apr 2011

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Development and Validation of Decision Rules to Guide Frequency of Monitoring CD4 Cell Count in HIV-1 Infection before Starting Antiretroviral Therapy

Thierry Buclin, Amalio Telenti, Rafael Perera, Chantal Csajka, Hansjakob Furrer, Jeffrey K. Aronson, Paul P. Glasziou

published 08 Apr 2011

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Fitness Ranking of Individual Mutants Drives Patterns of Epistatic Interactions in HIV-1

Javier P. Martínez, Gennady Bocharov, Anna Ignatovich, Jochen Reiter, Matthias T. Dittmar, Simon Wain-Hobson, Andreas Meyerhans

published 31 Mar 2011

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Spreading Patterns of the Influenza A (H1N1) Pandemic

Sergio de Picoli Junior, Jorge Juarez Vieira Teixeira, Haroldo Valentin Ribeiro, Luis Carlos Malacarne, Ricardo Paupitz Barbosa dos Santos, Renio dos Santos Mendes

published 31 Mar 2011

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Differences in Accumulation and Virulence Determine the Outcome of Competition during Tobacco etch virus Coinfection

Guillaume Lafforgue, Josep Sardanyés, Santiago F. Elena

published 15 Mar 2011

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Molecular Epidemiology and Evolution of Human Respiratory Syncytial Virus and Human Metapneumovirus

Eleanor R. Gaunt, Rogier R. Jansen, Yong Poovorawan, Kate E. Templeton, Geoffrey L. Toms, Peter Simmonds

published 01 Mar 2011

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Phylogenetic Diversity and Genotypical Complexity of H9N2 Influenza A Viruses Revealed by Genomic Sequence Analysis

Guoying Dong, Jing Luo, Hong Zhang, Chengmin Wang, Mingxing Duan, Thomas Jude Deliberto, Dale Louis Nolte, Guangju Ji, Hongxuan He

published 28 Feb 2011

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Longitudinal Study of Primary HIV-1 Isolates in Drug-Naïve Individuals Reveals the Emergence of Variants Sensitive to Anti-HIV-1 Monoclonal Antibodies

Bijayesh Haldar, Sherri Burda, Constance Williams, Leo Heyndrickx, Guido Vanham, Miroslaw K. Gorny, Phillipe Nyambi

published 23 Feb 2011

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The Role of Recombination for the Coevolutionary Dynamics of HIV and the Immune Response

Rafal Mostowy, Roger D. Kouyos, David Fouchet, Sebastian Bonhoeffer

published 18 Feb 2011

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