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Viral evolution

A Genome-Wide Comparative Evolutionary Analysis of Herpes Simplex Virus Type 1 and Varicella Zoster Virus

Peter Norberg, Shaun Tyler, [ ... ], Tomas Bergström

Evolution of H3N2 Influenza Virus in a Guinea Pig Model

Jinxue Long, Ruth V. Bushnell, [ ... ], Gregory J. Tobin

A Computational-Experimental Approach Identifies Mutations That Enhance Surface Expression of an Oseltamivir-Resistant Influenza Neuraminidase

Jesse D. Bloom, Jagannath S. Nayak, David Baltimore

Resistance to the CCR5 Inhibitor 5P12-RANTES Requires a Difficult Evolution from CCR5 to CXCR4 Coreceptor Use

Rebecca Nedellec, Mia Coetzer, [ ... ], Donald E. Mosier

Increased Sensitivity to Broadly Neutralizing Antibodies of End-Stage Disease R5 HIV-1 Correlates with Evolution in Env Glycosylation and Charge

Marie Borggren, Johanna Repits, [ ... ], Marianne Jansson

Novel Arenavirus Sequences in Hylomyscus sp. and Mus (Nannomys) setulosus from Côte d'Ivoire: Implications for Evolution of Arenaviruses in Africa

David Coulibaly-N'Golo, Bernard Allali, [ ... ], Stephan Günther

Human Endogenous Retrovirus K106 (HERV-K106) Was Infectious after the Emergence of Anatomically Modern Humans

Aashish R. Jha, Douglas F. Nixon, [ ... ], Satish K. Pillai

Variation in the Analysis of Positively Selected Sites Using Nonsynonymous/Synonymous Rate Ratios: An Example Using Influenza Virus

Jiming Chen, Yingxue Sun

Evolutionary Time-Scale of the Begomoviruses: Evidence from Integrated Sequences in the Nicotiana Genome

Pierre Lefeuvre, Gordon W. Harkins, [ ... ], Darren P. Martin

Change of Positive Selection Pressure on HIV-1 Envelope Gene Inferred by Early and Recent Samples

Izumi Yoshida, Wataru Sugiura, [ ... ], Hiroshi Tanaka

Rapid Estimation of Binding Activity of Influenza Virus Hemagglutinin to Human and Avian Receptors

Yang Cao, Xiaoying Koh, [ ... ], Taijiao Jiang

Development and Validation of Decision Rules to Guide Frequency of Monitoring CD4 Cell Count in HIV-1 Infection before Starting Antiretroviral Therapy

Thierry Buclin, Amalio Telenti, [ ... ], Paul P. Glasziou

Fitness Ranking of Individual Mutants Drives Patterns of Epistatic Interactions in HIV-1

Javier P. Martínez, Gennady Bocharov, [ ... ], Andreas Meyerhans

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