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Viral evolution

Human Endogenous Retrovirus K106 (HERV-K106) Was Infectious after the Emergence of Anatomically Modern Humans

Aashish R. Jha, Douglas F. Nixon, [ ... ], Satish K. Pillai

Variation in the Analysis of Positively Selected Sites Using Nonsynonymous/Synonymous Rate Ratios: An Example Using Influenza Virus

Jiming Chen, Yingxue Sun

Evolutionary Time-Scale of the Begomoviruses: Evidence from Integrated Sequences in the Nicotiana Genome

Pierre Lefeuvre, Gordon W. Harkins, [ ... ], Darren P. Martin

Change of Positive Selection Pressure on HIV-1 Envelope Gene Inferred by Early and Recent Samples

Izumi Yoshida, Wataru Sugiura, [ ... ], Hiroshi Tanaka

Rapid Estimation of Binding Activity of Influenza Virus Hemagglutinin to Human and Avian Receptors

Yang Cao, Xiaoying Koh, [ ... ], Taijiao Jiang

Development and Validation of Decision Rules to Guide Frequency of Monitoring CD4 Cell Count in HIV-1 Infection before Starting Antiretroviral Therapy

Thierry Buclin, Amalio Telenti, [ ... ], Paul P. Glasziou

Fitness Ranking of Individual Mutants Drives Patterns of Epistatic Interactions in HIV-1

Javier P. Martínez, Gennady Bocharov, [ ... ], Andreas Meyerhans

Spreading Patterns of the Influenza A (H1N1) Pandemic

Sergio de Picoli Junior, Jorge Juarez Vieira Teixeira, [ ... ], Renio dos Santos Mendes

Differences in Accumulation and Virulence Determine the Outcome of Competition during Tobacco etch virus Coinfection

Guillaume Lafforgue, Josep Sardanyés, Santiago F. Elena

Molecular Epidemiology and Evolution of Human Respiratory Syncytial Virus and Human Metapneumovirus

Eleanor R. Gaunt, Rogier R. Jansen, [ ... ], Peter Simmonds

Phylogenetic Diversity and Genotypical Complexity of H9N2 Influenza A Viruses Revealed by Genomic Sequence Analysis

Guoying Dong, Jing Luo, [ ... ], Hongxuan He

Longitudinal Study of Primary HIV-1 Isolates in Drug-Naïve Individuals Reveals the Emergence of Variants Sensitive to Anti-HIV-1 Monoclonal Antibodies

Bijayesh Haldar, Sherri Burda, [ ... ], Phillipe Nyambi

The Role of Recombination for the Coevolutionary Dynamics of HIV and the Immune Response

Rafal Mostowy, Roger D. Kouyos, David Fouchet, Sebastian Bonhoeffer

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