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Viral evolution

Genome Sequencing and Phylogenetic Analysis of 39 Human Parainfluenza Virus Type 1 Strains Isolated from 1997–2010

Eric T. Beck, Jie He, Martha I. Nelson, Michael E. Bose, Jiang Fan, Swati Kumar, Kelly J. Henrickson

published 27 Sep 2012

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Prolonged and Substantial Discordance in Prevalence of Raltegravir-Resistant HIV-1 in Plasma versus PBMC Samples Revealed by 454 “Deep” Sequencing

Guinevere Q. Lee, Luke C. Swenson, Art F. Y. Poon, Jeffrey N. Martin, Hiroyu Hatano, Steven G. Deeks, P. Richard Harrigan

published 26 Sep 2012

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Amino Acids Transitioning of 2009 H1N1pdm in Taiwan from 2009 to 2011

Guang-Wu Chen, Kuo-Chien Tsao, Chung-Guei Huang, Yu-Nong Gong, Shih-Cheng Chang, Yi-Chun Liu, Hsiao-Han Wu, Shu-Li Yang, Tzou-Yien Lin, Yhu-Chering Huang, Shin-Ru Shih

published 24 Sep 2012

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Phylogenetic Properties of RNA Viruses

Simone Pompei, Vittorio Loreto, Francesca Tria

published 20 Sep 2012

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Human Immunodeficiency Virus Type-1 (HIV-1) Continues to Evolve in Presence of Broadly Neutralizing Antibodies More than Ten Years after Infection

Antoine Chaillon, Martine Braibant, Stéphane Hué, Samia Bencharif, David Enard, Alain Moreau, Assia Samri, Henri Agut, Francis Barin

published 30 Aug 2012

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Molecular Evolutionary Analysis of pH1N1 2009 Influenza Virus in Reunion Island, South West Indian Ocean Region: A Cohort Study

Hervé Pascalis, Sarah Temmam, David A. Wilkinson, Najla Dsouli, Magali Turpin, Xavier de Lamballerie, Koussay Dellagi

published 27 Aug 2012

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Computational Identification of Novel Amino-Acid Interactions in HIV Gag via Correlated Evolution

Olga V. Kalinina, Heike Oberwinkler, Bärbel Glass, Hans-Georg Kräusslich, Robert B. Russell, John A. G. Briggs

published 03 Aug 2012

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Discovery of Novel dsRNA Viral Sequences by In Silico Cloning and Implications for Viral Diversity, Host Range and Evolution

Huiquan Liu, Yanping Fu, Jiatao Xie, Jiasen Cheng, Said A. Ghabrial, Guoqing Li, Xianhong Yi, Daohong Jiang

published 27 Jul 2012

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Development of Elvitegravir Resistance and Linkage of Integrase Inhibitor Mutations with Protease and Reverse Transcriptase Resistance Mutations

Mark A. Winters, Robert M. Lloyd Jr., Robert W. Shafer, Michael J. Kozal, Michael D. Miller, Mark Holodniy

published 18 Jul 2012

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Compensatory Evolution of Net-Charge in Influenza A Virus Hemagglutinin

Yuki Kobayashi, Yoshiyuki Suzuki

published 12 Jul 2012

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Characterization of Bean Necrotic Mosaic Virus: A Member of a Novel Evolutionary Lineage within the Genus Tospovirus

Athos Silva de Oliveira, Fernando Lucas Melo, Alice Kazuko Inoue-Nagata, Tatsuya Nagata, Elliot Watanabe Kitajima, Renato Oliveira Resende

published 08 Jun 2012

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Analysis of C3 Suggests Three Periods of Positive Selection Events and Different Evolutionary Patterns between Fish and Mammals

Fanxing Meng, Yuena Sun, Xuezhu Liu, Jianxin Wang, Tianjun Xu, Rixin Wang

published 18 May 2012

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Using Knowledge Fusion to Analyze Avian Influenza H5N1 in East and Southeast Asia

Erjia Ge, Robert Haining, Chi Pang Li, Zuguo Yu, Miu Yee Waye, Ka Hou Chu, Yee Leung

published 17 May 2012

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